Public Data Portal - Specimen Record

 
 
 
 
 
Specimen Data Sequences Combined
  Record Details For SDP547023-16     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 16_UNE_BenW_09A Museum ID:
  Field ID: 16_UNE_BenW_09A Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Arthropoda Subfamily: Carcininae
  Class: Malacostraca Genus: Carcinus
  Order: Decapoda Species: Carcinus maenas
  Family: Portunidae Subspecies:
  BIN (Cluster ID): BOLD:AAA7687
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction: S
  Tissue Descriptor: Sex:
  Brief Note: Gr.Crab, BenW, Life Stage: Adult
  Detailed Notes: ::meta:{"specimen":["Ben Wheeler"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Deborah Landry","Ben Wheeler"],"image":["Ben Wheeler"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Ben Wheeler"]}::endMeta:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2016-07-25
  Province/State: Maine Collectors: Ben Wheeler
  Region/County: Saco Bay    
  Sector:    
  Exact Site: Biddeford Pool    
  Latitude: 43.442 Elevation:
  Longitude: -70.341 Elv. Accuracy:
  Coord. Source: Depth: 1 Meters
  Coord. Accuracy: 5 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP547023-16.COI-5P GenBank Accession: KY250730
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 592 bp
 
AGTGCTTGAGCTGGCATAGTAGGGACTTCTTTGAGTCTTATTATTCGAGCTGAATTAGGGCAGCCAGGAACTTTA
ATCGGTAACGACCAAATTTATAACGTTGTTGTAACTGCTCATGCTTTTGTAATAATTTTTTTCATAGTAATACCA
ATTATAATTGGAGGATTTGGTAATTGACTTGTACCTCTAATATTAGGAGGGCCAGATATAGCTTTTCCTCGAATA
AATAATATAAGGTTCTGATTACTTCCTCCGTCTTTAACCTTACTTTTAATAAGAGGGATGGTAGAAAGAGGAGTT
GGAACAGGATGAACAGTCTATCCTCCTTTAGCAGGGGCTATCGCCCATGCTGGTGCTTCAGTTGATTTAGGGATT
TTCTCTTTACATTTAGCCGGGGTTTCTTCTATTTTAGGAGCTGTAAATTTTATAACAACTATTATCAATATGCGT
TCTTTCGGCATGACAATAGACCAGATACCTTTATTTGTGTGAGCTGTTTTTATTACTGCGATCCTTTTATTATTA
TCGTTGCCGGTTTTAGCAGGAGCTATTACAATACTTCTAACTGACCGAAATCTAAACACCTCATTCG
  Amino Acids:  
 
SAWAGMVGTSLSLIIRAELGQPGTLIGNDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGGPDMAFPRM
NNMSFWLLPPSLTLLLMSGMVESGVGTGWTVYPPLAGAIAHAGASVDLGIFSLHLAGVSSILGAVNFMTTIINMR
SFGMTMDQMPLFVWAVFITAILLLLSLPVLAGAITMLLTDRNLNTSFX
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
552 LCO1490 / HCO2198
M13R
Reverse high qual 2016-08-12  
552 LCO1490 / HCO2198
M13F-20
Forward high qual 2016-08-12  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2016)
  License Holder:
Unspecified, University of New England

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Ben Wheeler, University of New England
Collectors: Ben Wheeler
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: