The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
John A. Darling, Mark J. Bagley, Joe Roman, Carolyn K. Tepolt and Jonathan B. Geller Genetic patterns across multiple introductions of the globally invasive crab genus Carcinus. Molecular Ecology 2008-12-01;17(23):4992-5007 (PDF)
Joe Roman and Stephen R. Palumbi A global invader at home: population structure of the green crab, Carcinus maenas, in Europe. Molecular Ecology 2004-10-01;13(10):2891-2898 (PDF)
Lobo, Jorge; Costa, Pedro M; Teixeira, Marcos AL; Ferreira, Maria SG; Costa, Maria H; Costa, Filipe O Enhanced primers for amplification of DNA barcodes from a broad range of marine metazoans BMC Ecology 2013-09-10;13(1):34 (PDF)
Pilar A. Haye, Nicolás I. Segovia, Raúl Vera, María de los Ángeles Gallardo and Cristian Gallardo-Escárate Authentication of commercialized crab-meat in Chile using DNA Barcoding Food Control 2011-10-23;25(1):239-244 (PDF)
Adriana E. Radulovici, Bernard Sainte-Marie and France Dufresne DNA barcoding of marine crustaceans from the Estuary and Gulf of St Lawrence: a regional-scale approach Molecular Ecology Resources 2009-04-21;9(S1):181-187 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Australia - [6]
France - [1]
Norway - [8]
Germany - [29]
Portugal - [6]
Iceland - [1]
Sweden - [3]
Faeroe Islands - [1]
United States - [151]
Canada - [462]
United Kingdom - [6]
North Sea - [21]
Spain - [1]
Netherlands - [3]
Ireland - [1]
Denmark - [4]
DATA MANAGERS:
Public Data:
Private Data:
Christine Morrow - [1] Sujeevan Ratnasingham - [727] Student Portal Manager - [8] Filipe Costa - [4] Kara K. S. Layton - [6] Ann M Evankow - [2] Joana Dias - [2] Kennet G Lundin - [2] Aina Aspaas - [3] CBG Collections Unit - [1] Michael J. Raupach - [14] Robert G. Young - [4] Nicholas Jeffery - [2] Jorge Lobo Arteaga - [1] Gary Saunders - [7] Joana Matzen Silva - [5] Adriana Radulovici - [16] Sharon A. Appleyard - [5]
Berry van der Hoorn - [3] Matt Lemay - [2] Michael J. Raupach - [1] Robert Aguilar - [1] Katrine Kongshavn - [1] Michael J.V. O'Mahoney - [1] Pedro Martinez Arbizu - [6]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
NOLI014-15 {Carcinus maenas}
License:
CreativeCommons Attribution ShareAlike (2015)
License Holder:
NTNU University Museum, Department of Natural History
Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [21]
Florida Museum of Natural History - [1]
Goteborg Natural History Museum - [2]
Government of Western Australia, Dept of Fisheries - [1]
Hakai Institute - [1]
Institute of Marine Research, Portugal - [1]
Mined from GenBank, NCBI - [727]
NTNU University Museum, Department of Natural History - [3]
Naturalis Biodiversity Center - [3]
Ocean Genome Legacy - [2]
Royal British Columbia Museum - [6]
Senckenberg Research Institute and Natural History Museum - [1]
Smithsonian Institution, National Museum of Natural History - [1]
Tasmanian Museum and Art Gallery - [2]
Universidade de Lisboa, Museu Nacional de Historia Natural - [5]
Universidade do Minho - [4]
Universite du Quebec a Rimouski - [16]
University of Bergen, Natural History Collections - [1]
University of Florida, Florida Museum of Natural History - [1]
University of New Brunswick, Fredericton - [7]
University of New England - [8]
Western Australian Museum - [1]
Sequencing Centers:
Bangor University - [5] Centre for Biodiversity Genomics - [50] Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [17] Generic Commercial Labs - [8] Macrogen, Europe - [1] National Research Council of Canada, DNA Technologies Laboratory - [2] Ocean Genome Legacy - [2] Smithsonian Institution, Laboratories of Analytical Biology - [2] Universidade Nova de Lisboa, Instituto do Mar - [1] University of New Brunswick, Centre for Environmental & Molecular Algal Research - [7]
Photography:
Barco & Knebelsberger - [6] Ben Wheeler - [1] Bernard Picton - [1] CBG Photography Group - [4] CEMAR Research Group - [7] Cicy Po - [1] Grethe Sundet Haugen - [3] Inga Mohrbeck - [3] Jorge Lobo - [2] K.Kongshavn - [2] Kennet Lundin - [2] Kyle Hall - [1] Melissa Frey - [6] Michael Raupach - [1] Ocean Genome Legacy - [4] Olivia Garand - [3] RDailey - [4] Rob Young - [8] Robert Ochan - [1]
Collectors:
A Landry - [1] Aaron Landry - [2] Adriana Radulovici - [2] Angel Cicia - [1] Arjen Speksnijder - [1] BIObus 2013 - [1] Ben Wheeler - [1] Bernard Picton - [1] Borrett - [5] CAISN Network - [4] CMAR - [4] Christine Morrow - [1] Cicy Po - [1] D. McDevit & N. Hawkins - [7] Damaris Margaritis - [6] Faunistikk 2015 - [1] Felicity McEnnulty - [2] Frey - [1] GWS - [7] Grethe Sundet Haugen - [3] Hakai Institute - [1] Hermann Neumann - [1] Isabell Schmalenbach - [1] Joana Matzen Silva - [3] Kyle Hall - [1] Kyle Matheson - [1] L. Meehan - [1] M. - [1] Maria Helena Costa & Jorge Lobo - [1] Melanie Bishop - [1] Michael J. Raupach - [2] Michael Raupach - [10] Nick Jeffery & Kara Layton - [2] NiklasTysklind - [2] P. - [5] PBCB Bioblitz 2017 - [2] Pedro Gomes - [4] Peter van Bragt - [2] R. Dailey - [1] Rob Gurney - [1] Robert Aguilar - [1] Ron Thresher - [2] Thomas Knebelsberger - [1] Traian Brad - [14] Ulrike Schueckel - [6]
Specimen Identification:
Antonina dos Santos - [3] Christine Morrow - [1] Felicity McEnnulty - [1] Grethe S Haugen - [3] Gustav Paulay - [2] Hermann Neumann - [3] Inga Mohrbeck - [3] Jorge Lobo Arteaga - [1] Kara K. S. Layton - [1] Kennet G Lundin - [2] Kyle D Hall - [1] Mary Greenlaw - [4] Melissa Frey - [1] Michael J. Raupach - [9] N. Hawkins - [7] Nicholas Jeffery - [2] Paige E. Borrett - [5] Pedro T. Gomes - [4] Peter Van Bragt - [3] Robert Aguilar - [1] Seema Fotedar - [2] Simon Webster - [2] Student - [8] Tom Alvestad - [1]