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Specimen Data Sequences Combined
  Record Details For SDP396004-15     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 15_UNE_KC_001 Museum ID:
  Field ID: 15_UNE_KC_001 Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Chordata Subfamily: Alosinae
  Class: Actinopterygii Genus: Alosa
  Order: Clupeiformes Species: Alosa pseudoharengus
  Family: Clupeidae Subspecies:
  BIN (Cluster ID): BOLD:AAB1380
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction:
  Tissue Descriptor: DNA Sex:
  Brief Note: Alewife, KatyConn, #10, DL19, DL20 Life Stage:
  Detailed Notes: ::meta:{ specimen :[ Katherine Connelly ], image :[ Katherine Connelly ], trace_run_site :[ Generic Commercial Lab ], trace_upload :[ Katherine Connelly ], sequencing_run_site :[ Generic Commercial Lab ], sequence_upload :[ Katherine Connelly ]}::endMeta:5cm, 1cm ; White/Silver, forest green.
 
  COLLECTION DATA:
  Country: United States Date Collected: 2015-08-03
  Province/State: Maine Collectors: KConnelly
  Region/County: Saco River, Maine    
  Sector:    
  Exact Site: Freddie's Beach    
  Latitude: 43.46 Elevation:
  Longitude: -70.379 Elv. Accuracy:
  Coord. Source: Depth: 1 Meters
  Coord. Accuracy: 5 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP396004-15.COI-5P GenBank Accession: KU564521
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 636 bp
 
GGTGCCTGAGCAGGGATAGTAGGCACTGCCTTAAGTCTCTTAATCCGAGCAGAACTGAGCCAACCCGGGGCACTT
CTCGGAGACGATCAGATCTATAACGTCATCGTTACGGCGCACGCCTTCGTAATAATCTTCTTCATAGTAATGCCA
ATTCTAATTGGTGGCTTTGGGAACTGACTAGTCCCCCTTATGATCGGGGCACCAGACATGGCATTCCCACGAATG
AACAACATGAGCTTCTGACTACTTCCGCCCTCATTCCTCCTCCTTCTTGCCTCATCCGGGGTTGAGGCCGGGGCA
GGAACCGGATGAACAGTCTACCCGCCCTTGGCAGGTAATCTTGCCCACGCCGGAGCGTCCGTCGATCTAACTATC
TTCTCTCTTCATCTAGCAGGTATCTCATCAATTCTTGGGGCCATTAATTTTATTACCACAATTATTAATATGAAA
CCCCCTGCAATCTCACAATATCAAACACCCCTATTTGTGTGATCCGTGCTTGTAACGGCCGTTCTCCTTCTTCTC
TCACTCCCTGTGTTAGCTGCTGGGATTACAATGCTCCTAACAGACCGAAATCTAAATACGACCTTCTTTGACCCG
GCAGGGGGAGGGGACCCAATTCTATATCAACACCTA
  Amino Acids:  
 
GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRM
NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMK
PPAISQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
539 FishF2 / FishR2
M13R
Reverse high qual 2015-08-07  
537 FishF2 / FishR2
M13F-20
Forward high qual 2015-08-07  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2015)
  License Holder:
Unspecified, University of New England

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  License:
CreativeCommons - Attribution Share-Alike (2015)
  License Holder:
Unspecified, University of New England

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: , University of New England Katie Connelly, University of New England
Collectors: KConnelly
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: