The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Plough, Louis, V., Ogburn, Matthew Bryan, Fitzgerald, Catherine L., Geranio, Rose, Marafino, Gabriella A. and Richie, Kimberly D. Environmental DNA analysis of river herring in Chesapeake Bay: A powerful tool for monitoring threatened keystone species Plos One 2018-11-01;13(11):1-25 (PDF)
Robert Aguilar, Matthew B. Ogburn, Amy C. Driskell, Lee A. Weigt, Mary C. Groves, Anson H. Hines Gutsy genetics: identification of digested piscine prey items in the stomach contents of sympatric native and introduced warmwater catfishes via DNA barcoding Environmental Biology of Fishes 2016-09-19;4(100):325-336 (PDF)
M. R. McCusker, D. Denti, L. Van Guelpen, E. Kenchington and P. Bentzen Barcoding Atlantic Canada's commonly encountered marine fishes Molecular Ecology Resources 2012-12-17;13(2):177-188 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
J. April, R. L. Mayden, R. H. Hanner and L. Bernatchez Genetic calibration of species diversity among North America's freshwater fishes Proceedings of the National Academy of Sciences 2011-06-13;108(26):10602-10607 (PDF)
Nicolas Hubert, Robert Hanner, Erling Holm, Nicholas E. Mandrak, Eric Taylor, Mary Burridge, Douglas Watkinson, Pierre Dumont, Allen Curry, Paul Bentzen, Junbin Zhang, Julien April and Louis Bernatchez Identifying Canadian Freshwater Fishes through DNA Barcodes PLoS ONE 2008-06-18;3(6):e2490 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
Color & Label Scheme:
Canada - 
United States - 
Amy C. Driskell -  Sujeevan Ratnasingham -  Paul Bentzen -  Melanie V. Roy -  Ramya Manjunath -  Nicolas Hubert -  US EPA -  Student Portal Manager -  Robert G. Young -  Andrew C. Bentley - 
Joel Llopiz -  Robert Wilson -  Amy C. Driskell -  Tyler Zemlak -  Danielle Bourque -  Robert Hanner - 
Environmental Protection Agency, Office of Research and Development, Duluth, MN - 
Mined from GenBank, NCBI - 
Royal Ontario Museum - 
Smithsonian Institution National Museum of Natural History - 
University of Kansas, Biodiversity Research Center - 
University of New England - 
Woods Hole Oceanographic Institution - 
Biodiversity Institute of Ontario -  Environmental Protection Agency, Office of Research and Development Cincinnati -  Generic Commercial Labs -  National Research Council (NRC) Saskatoon -  Smithsonian Institution, Laboratories of Analytical Biology -  University of Guelph, Hanner Laboratory - 
Alexander Chen -  CBG Photography Group -  Charlotte Schoelinck -  Deborah Landry -  Katie Connelly - 
CAISN Network -  D. Clarke -  Emma Libby -  Erling Holm -  HBenoit -  Heath Stone -  Joel Llopiz -  John Hayward -  Julien April -  KConnelly -  Kate A -  Kristen Eugley -  L. Harris -  MN -  MN-DNR staff - Duluth -  Moots -  Northeast Fisheries Science Center -  Paul Bentzen -  Peter Chase NOAA -  Robert Aguilar -  Stephen L. Clifford -  Tom Hurlbut -  USFWS staff - Ashland -  W-MacEarchen -  WI -  William MacEachern -  Willy E. Bemis - 
Bruce B. Collette -  CBG Collections Unit -  Danielle Bourque -  Erling Holm -  FWS staff - Ashland, WI -  Joel Llopiz -  John Hayward -  Julien April -  Lou Van Guelpen -  MN-DNR staff - Duluth, MN -  Robert Aguilar -  Robert G. Young -  Student -