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Specimen Data Sequences Combined
  Record Details For LEDCL071-17     Back to Search: Records
  IDENTIFIERS:
  Sample ID: JE-8814 Museum ID: JE-8814
  Field ID: JE-8814 Collection Code:
  Deposited In: Universidad Nacional Autonoma de Mexico, Instituto de Biologia
 

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  TAXONOMY:
  Phylum: Tracheophyta Subfamily: Echeverioideae
  Class: Magnoliopsida Genus: Echeveria
  Order: Saxifragales Species: Echeveria sp.
  Family: Crassulaceae Subspecies:
  BIN (Cluster ID):
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: Reproduction:
  Tissue Descriptor: Sex:
  Brief Note: Life Stage:
  Detailed Notes:
 
  COLLECTION DATA:
  Country: Mexico Date Collected:
  Province/State: Guerrero Collectors: Jeronimo Reyes Santiago
  Region/County:    
  Sector:    
  Exact Site: Canada La Loma, al Noroeste de Tlapa de Comonfor    
  Latitude: 17.5548 Elevation: 1121 Meters
  Longitude: -98.5818 Elv. Accuracy:
  Coord. Source: Depth:
  Coord. Accuracy: Depth Accuracy :
 
 

  SEQUENCE: rbcLa   [Funding Source: N/A]
  Sequence ID: LEDCL071-17.rbcLa GenBank Accession: MG521761
  Last Updated: 2024-09-24 Genome: Chloroplast
  Locus:
  Nucleotides: 553 bp
 
AAGTGTTGGATTTAAAGCTGGTGTTAAAGAGTATAAATTGACTTATTATACTCCTGACTATGAAACCAAGGATAC
TGATATCTTAGCAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCACCTGAGGAAGCAGGGGCTGCAGTAGCTGC
TGAATCTTCTACTGGTACATGGACAACTGTGTGGACTGATGGACTTACCAGCCTTGATCGTTACAAAGGACGATG
CTACCACATCGAGCCCGTTGCTGGAGAAGAAAATCAATTTATTGCTTATGTAGCTTATCCTTTAGACCTGTTTGA
AGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTTTTTGGGTTCAAAGCCCTGCGTGCTCTACG
TCTGGAGGATCTGCGAATTCCTGTTGCTTATGTTAAAACTTTCCAAGGACCACCTCATGGTATTCAAGTTGAAAG
AGATAAATTGAACAAGTATGGGCGTCCTCTATTAGGATGTACTATTAAACCGAAATTGGGATTATCTGCTAAGAA
CTATGGTAGAGCAGTTTATGAATGTCTA
  Amino Acids:  
 
SVGFKAGVKEYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRC
YHIEPVAGEENQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVER
DKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECL
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: rbcLa
  Length Pcr Primers Seq Primer Read Status Run Date  
519 rbcLa-F / rbcLa-R
rbcLa-F
Forward high qual 2017-07-24  
518 rbcLa-F / rbcLa-R
rbcLa-R
Reverse high qual 2017-07-24  
 

  SEQUENCE: ITS2   [Funding Source: N/A]
  Sequence ID: LEDCL071-17.ITS2 GenBank Accession:
  Last Updated: 2024-09-24 Genome: Nuclear
  Locus:
  Nucleotides: 341 bp
 
TGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTTTAGGCCAAGGGCACGTCTGCC
TGGGCGTCATGCACTGCGATGCCCCC--ATGC-AAGCATGC-GGGGCGAATCTTGGCTTCCCGTGAGCCCATCTC
GCGGATGGCTTAAAAAAGAGCCTAGAGACGGTAAAAACGTCGCGATAAGTGGTGGTTAAGAGGCTTTCGGCCCCG
AAACTTAGCGCATCGCGACGTCACCCGGCCCGTGCTCG-GAAAAGACCTAAGCGGAGCGCTAATGCGCCGCCAGC
ATCGTGACCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAA
  Amino Acids:  
 
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: ITS2
  Length Pcr Primers Seq Primer Read Status Run Date  
311 ITS_S2F / ITS4
ITS4
Reverse high qual 2017-08-11  
293 ITS_S2F / ITS4
ITS_S2F
Forward high qual 2017-08-10  
 

  SEQUENCE: matK   [Funding Source: N/A]
  Sequence ID: LEDCL071-17.matK GenBank Accession: MG521637
  Last Updated: 2024-09-24 Genome: Chloroplast
  Locus: Maturase K
  Nucleotides: 487 bp
 
AAAAAAAAAACACACTTCTAC---------------------AAGAAGTGTTTTCTATTCAAACTAAGCTGAGGT
TGTTCAAGGATCCATTTATTCATTATGTTAGGTATCAAGGAAAAGTTTTTTGGGGATCAAAAGGCACGCCTCTTC
TGATGAGTAAATGGAAATATTACCTTATTACTTTATGGCAATGTCATTTTTACGTGTGGGTTCAACCCGGGCGAG
TTTATATCAACCAACTATCCAAACATTCCTTCGACTTTATGGGTTATTTGTCGAATCTGGGACTCATTTTTTCAG
TTGTACGGAGTCAACTATTAGACAATTCATTTATAATTAAGAATGCTATTAAGCAGTTATATATTATAGTTCCCA
TTTTGTCTCTTATTGACTCATTGGCTAAAGCCAAGTTTTGTAATCTATTTGGGCATCCCATTAGTAAACCTGCCT
GGACCGATTCAGTCGATTCGGATATTATCGACCGATT
  Amino Acids:  
 
KKNTLLX------XEVFSIQTKLRLFKDPFIHYVRYQGKVFWGSKGTPLLMSKWKYYLITLWQCHFYVWVQPGRV
YINQLSKHSFDFMGYLSNLGLIFSVVRSQLLDNSFIIKNAIKQLYIIVPILSLIDSLAKAKFCNLFGHPISKPAW
TDSVDSDIIDRX
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: matK
  Length Pcr Primers Seq Primer Read Status Run Date  
673 matK-CRASS-F / matK-CRASS-R
matK-CRASS-R
Reverse med qual 2017-08-12  
589 matK-CRASS-F / matK-CRASS-R
matK-CRASS-F
Forward low qual 2017-08-12  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Non-Commercial Share-Alike (2017)
  License Holder:
Luis Emilio de la Cruz, UNAM

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Collection Site:

  Attribution:
Specimen Depository: Universidad Nacional Autonoma de Mexico, Instituto de Biologia
Sequencing Center:
Photography: Luis Emilio de la Cruz, UNAM
Collectors: Jeronimo Reyes Santiago
Specimen Identification: Jeronimo Reyes Santiago
Project Manager: Francisco Vergara-Silva
Sequencing Support: