The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Peter Huemer, Paul D. N. Hebert, Marko Mutanen, Christian Wieser, Benjamin Wiesmair, Axel Hausmann, Roman Yakovlev, Markus Möst, Brigitte Gottsberger, Patrick Strutzenberger, Konrad Fiedler Large geographic distance versus small DNA barcode divergence: Insights from a comparison of European to South Siberian Lepidoptera PLoS ONE 2018-06-08;13(11):0-0
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Norway - [27]
United Kingdom - [4]
Finland - [4]
Germany - [6]
Macedonia - [1]
Austria - [3]
Italy - [4]
Russia - [5]
DATA MANAGERS:
Public Data:
Private Data:
Marko Mutanen - [3] Paul Hebert - [2] Arild Johnsen - [2] Andreas Segerer - [5] Scott E. Miller - [2] Peter Huemer - [8] Torbjorn Ekrem - [2] Albert Phillimore - [2]
Andreas Segerer - [1] CBG Collections Unit - [1] Thor H Ringsby - [23] Wolfgang Stark - [1] Marko Mutanen - [2]
NTNU University Museum, Department of Natural History - [2]
Natural History Museum, London - [2]
Naturmuseum Suedtirol - [1]
Research Collection of Kai Berggren - [1]
Research Collection of Peter Buchner - [1]
Research Collection of Peter Lichtmannecker - [2]
Research Collection of Richard Heindel - [1]
Research Collection of Theo Gruenewald - [1]
Research Collection of Wolfgang Stark - [1]
SNSB, Zoologische Staatssammlung Muenchen - [2]
Smithsonian Institution, National Museum of Natural History - [2]
Tiroler Landesmuseen - [6]
University of Edinburgh - [2]
University of Oslo, Natural History Museum - [1]
University of Oulu, Zoological Museum - [3]
University of Turku - [2]
Sequencing Centers:
Biodiversity Institute of Ontario - [23] Centre for Biodiversity Genomics - [2] Unknown - [1]
Photography:
CBG Photography Group - [2] CBG Robotic Imager - [24] G. Rotheneder - [1] Jaclyn McCormick - [5] Jamie Weir, Becky Dubowitz - [2] Kai Berggren - [1] Leif Aarvik - [1] Mikhail Kozlov - [2] Peter Buchner - [1] Sondre Dahle - [2] ZSM Hymenoptera Photography Group - [3] ZSM Photography Team - [1]
Collectors:
ABP - [2] Aarvik - [1] DW - [2] Deutsch H. - [1] Dr. Andreas H. Segerer - [2] Dr. Theo Gruenewald - [1] E.Jackh - [2] GD - [2] GDS - [2] Huemer P. - [2] Huemer P. & Tarmann G. M. - [1] Huemer P. & Wiesmair B. - [3] JC - [2] JDS - [2] KK - [2] KM - [2] Kai Berggren - [1] LM - [2] Leif - [1] M.Parsons - [1] Maija Sujala - [1] Marko Mutanen - [3] Mikhail Kozlov - [2] NA - [2] Panu Vaelimaeki - [1] Peter Buchner - [1] Peter Lichtmannecker - [2] Richard Heindel - [1] SMP 84 - [1] T.H. Ringsby and B.-E. Saether - [23] TB - [2] TJB - [2] Vitali Zverev - [2] lgt. W.Stark - [1]
Specimen Identification:
Andreas Segerer - [6] E. Jackh - [2] Kai Berggren - [3] Leif Aarvik - [1] Marko Mutanen - [3] Mikhail V. Kozlov - [2] Peter Buchner - [1] Peter Huemer - [7] Renee Miskie - [24] Wolfgang Stark - [1]