The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [33]
Norway - [7]
United Kingdom - [3]
Germany - [13]
Italy - [7]
Finland - [10]
United States - [14]
Macedonia - [1]
Austria - [8]
Netherlands - [1]
Denmark - [2]
China - [1]
DATA MANAGERS:
Public Data:
Private Data:
Mat Seidensticker - [1] Arild Johnsen - [6] CBG Collections Unit - [14] Beverly Mcclenaghan - [1] Torbjorn Ekrem - [2] Bjoern Rulik - [2] Axel Hausmann - [2] Andreas Segerer - [6] Peter Huemer - [12] Paul Hebert - [3] Daniel Handfield - [1] Jeremy deWaard - [18] Camiel Doorenweerd - [1] Marko Mutanen - [10] Jean-Francois Landry - [2] Sujeevan Ratnasingham - [1]
Peter Huemer - [2] Maria A Parreno - [2] CBG Collections Unit - [3] Wolfgang Stark - [2] Axel Hausmann - [1] May Bente Brurberg - [1] Jeremy deWaard - [7]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
RDLQE382-06 {Spilonota ocellana}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Haus der Natur, Landessammlungen Niederoesterreich - [1]
Landesmuseum Kaernten - [1]
MPG Ranch - [1]
Mined from GenBank, NCBI - [1]
NTNU University Museum, Department of Natural History - [2]
Natural History Museum, London - [3]
Naturalis Biodiversity Center - [1]
Naturmuseum Suedtirol - [1]
Norwegian Institute for Agricultural and Environmental Research - [1]
Research Collection of Alfred Haslberger - [1]
Research Collection of Beverly Mcclenaghan - [1]
Research Collection of D. Holden - [2]
Research Collection of Daniel Handfield - [4]
Research Collection of Hartmut Wegner - [1]
Research Collection of Kai Berggren - [2]
Research Collection of Peter Buchner - [1]
Research Collection of Theo Gruenewald - [1]
Research Collection of Wolfgang Stark - [1]
Royal British Columbia Museum - [1]
SNSB, Zoologische Staatssammlung Muenchen - [6]
Technische Universitat Muenchen - [2]
Tiroler Landesmuseen - [8]
Tiroler Landesmuseum Ferdinandeum - [1]
University of Oslo, Natural History Museum - [4]
University of Oulu, Zoological Museum - [10]
Zoologisches Forschungsmuseum Alexander Koenig - [2]
inatura, Dornbirn - [2]
Sequencing Centers:
Biodiversity Institute of Ontario - [85] Centre for Biodiversity Genomics - [6] GATC Biotech AG - [1] Naturalis Biodiversity Center - [1] Unknown - [1]
Photography:
CBG Photography Group - [5] Erik Bostrom - [2] Even Sannes Riiser - [2] G. Rotheneder - [2] Hilary Lyttle - [3] Jaclyn McCormick - [24] Jay Cossey - [3] Jean-Francois Landry - [2] Jeremy deWaard - [1] Kai Berggren - [5] Lauren Van Patter - [1] Leif Aarvik - [1] M. Seidensticker - [2] Megan Swan - [2] Naturalis DNA barcoding facility - [1] Peter Buchner - [1] Peter Huemer - [2] Richard Wilson - [10] Rick Turner - [5] S. Heim - [2] ZSM Hymenoptera Photography Group - [1] ZSM Photography Team - [4] photo work group Dr. Axel Hausmann - [1]
Collectors:
A. - [1] A. Hausmann - [1] A. Li - [1] Alfred Haslberger - [1] Anttoni Mutanen - [1] Atsalea Mutanen - [2] B. McClenaghan - [1] BIObus 2009 - [2] CBG Collections Staff - [1] Carl Fredrik - [2] Ch. - [1] D Holden - [2] D.Handfield - [1] Daniel Handfield - [3] Doorenweerd - [1] Dr. Andreas H. Segerer - [3] Dr. Theo Gruenewald - [1] F.Tremblay - [1] GAC 0423 - [1] Hartmut Wegner - [1] Huemer P. - [10] Huemer P. & Tarmann G. M. - [1] J. Derhousoff - [1] K. Ambil - [1] K. Gregersen - [2] Kai Berggren - [3] Kate Stone - [1] L Mavin & M Young - [19] Leif Aarvik - [1] Li - [1] Luehr - [2] Marko Mutanen - [9] Marko.Mutanen - [1] Mat Seidensticker - [1] Meelika Mutanen - [2] Nestori Mutanen - [1] Panu Vaelimaeki - [2] Paul Hebert - [1] Peter Buchner - [1] Peter Huemer - [1] R.Wilson - [2] Richard Wilson - [11] Robin Barfoot - [1] Rulik et al - [2] Stark - [1] Sverre Kobro - [1] Sylvia Mutanen - [2] V. Gayk - [1] Wieser - [1] Wolfgang - [1] lgt. W.Stark - [1]
Specimen Identification:
Andreas Segerer - [6] Angela Telfer - [1] Axel Hausmann - [3] BOLD ID Engine - [1] Camiel Doorenweerd - [1] Christian Wieser - [1] Daniel Handfield - [4] Dick Wilson - [2] Jean-Francois Landry - [2] Kai Berggren - [7] Kate Perez - [7] Leif Aarvik - [1] Leland M. Humble - [5] Marko Mutanen - [10] Paul Hebert - [1] Peter Buchner - [1] Peter Huemer - [12] Richard L. Wilson - [6] Sverre Kobro - [1] Wolfgang Stark - [2]