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The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Paul D. N. Hebert, Thomas W. A. Braukmann, Sean W. J. Prosser, Sujeevan Ratnasingham, Jeremy R. deWaard, Natalia V. Ivanova, Daniel H. Janzen, Winnie Hallwachs, Suresh Naik, Jayme E. Sones and Evgeny V. Zakharov A Sequel to Sanger: amplicon sequencing that scales BMC Genomics 2018-03-27;19(219):0-0
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Jean-François Landry, Vazrick Nazari, Jeremy R. Dewaard, Marko Mutanen, Carlos Lopez-Vaamonde, Peter Huemer and Paul D.N. Hebert Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology Zootaxa 2013-12-16;3749(1):1-93 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United Kingdom - [1]
Italy - [15]
Austria - [79]
Slovenia - [6]
Croatia - [3]
France - [8]
United States - [6]
Finland - [3]
Canada - [49]
Germany - [23]
Netherlands - [1]
Norway - [2]
Liechtenstein - [2]
DATA MANAGERS:
Public Data:
Private Data:
Sujeevan Ratnasingham - [1] Andreas Segerer - [17] CBG Project Management Team - [46] Peter Huemer - [21] Arild Johnsen - [4] Camiel Doorenweerd - [4] Bjoern Rulik - [1] Stefan Schmidt - [2] Marko Mutanen - [3] Carlos Lopez-Vaamonde - [35] Alex Smith - [1]
CBG Collections Unit - [38] Daniel Handfield - [2] Carlos Lopez-Vaamonde - [4] Stefano Scalercio - [4] Peter Huemer - [9] Natalia Kirichenko - [2] Alfred Haslberger - [2] Axel Hausmann - [1] Kurt Lechner - [1] Wolfgang Stark - [1]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [4]
Institut National de la Recherche Agronomique, Zoologie Forestiere - [1]
Landesmuseum Kaernten - [24]
Mined from GenBank, NCBI - [1]
Naturalis Biodiversity Center - [4]
Research Collection of A. Mayr - [1]
Research Collection of Alain Cama - [4]
Research Collection of Alfred Haslberger - [4]
Research Collection of Carlos Lopez Vaamonde - [3]
Research Collection of Daniel Handfield - [2]
Research Collection of Gerfried Deschka - [4]
Research Collection of Helmut Deutsch - [6]
Research Collection of Kai Berggren - [3]
Research Collection of Kurt Lechner - [1]
Research Collection of M. Alex Smith - [1]
Research Collection of Stanislav Gomboc - [6]
Research Collection of Theo Gruenewald - [1]
Research Collection of Thomas Guggemoos - [11]
Research Collection of Toni Mayr - [4]
Research Collection of Wolfgang Stark - [1]
SNSB, Zoologische Staatssammlung Muenchen - [6]
Sukachev Institute of Forest Siberian Branch of Russian Academy of Sciences - [2]
Tiroler Landesmuseum Ferdinandeum - [15]
University of Oslo, Natural History Museum - [1]
University of Oulu, Zoological Museum - [3]
Zoologisches Forschungsmuseum Alexander Koenig - [1]
inatura, Dornbirn - [1]
Sequencing Centers:
Canadian Centre for DNA Barcoding - [1] Centre for Biodiversity Genomics - [119] Naturalis Biodiversity Center - [4]
Photography:
A Haslberger - [2] Alain Cama - [1] Andreas Segerer - [1] Antoine Maignan - [3] CBG Robotic Imager - [38] Carlos Lopez Vaamonde - [1] Christian Wieser - [3] Daniel Handfield - [2] David C. Lees - [32] Florence Gutzwiller - [1] G. Rotheneder - [1] Giuseppe Rijllo - [4] Hymenoptera Photo Group - [1] Kai Berggren - [4] Lepidoptera photo group - [1] Natalia Kirichenko - [1] Paivi Tanner - [1] Willem Ellis - [1]
Collectors:
A. Haslberger - [2] A.Sritharan - [1] Alain Cama - [4] Alfred Haslberger - [1] BIO Collections Staff - [3] BIObus 2013 - [1] C. Eiseman - [1] C. Eiseman & J. Blyth - [2] CBG Collections Staff - [28] CBH staff - [6] Carlos Lopez Vaamonde - [3] Ch. - [4] Christian Wieser - [19] D.Burke - [1] D.Doczkal & J.Voith - [1] Dr. Andreas H. Segerer - [2] Dr. Theo Gruenewald - [1] E.J. van Nieukerken - [2] Franz Theimer - [1] G. - [1] G. Deschka & S. Garmat - [1] G. Sellmayer - [2] Gerfried Deschka - [1] Handfield D. - [2] Harold Brenner - [38] Helmut Deutsch - [6] Huemer P. - [16] Indra - [1] Jeff Howard - [2] John Langmaid - [1] K.Kerr - [1] Kai Berggren - [4] Lechner K. - [1] Marko Mutanen - [3] Mayr A. - [5] N. Kirichenko - [1] Natalia Kirichenko and Stanislav Gomboc - [1] Panu Vaelimaeki - [3] Paul Hebert - [1] Petri Hirvonen - [3] R.Blakeney - [1] Rulik et al - [1] Stanislav Gomboc - [6] Thomas Guggemoos - [11] Tyler Zemlak - [3] W. Ellis - [1] Werner Wolf - [1] Wieser - [4] lgt. W.Stark - [1]
Specimen Identification:
Alain Cama - [2] Alex Smith - [1] Alfred Haslberger - [2] Andreas Segerer - [17] Angela Telfer - [11] Anton Mayr - [1] Axel Hausmann - [1] Camiel Doorenweerd - [1] Carlos Lopez-Vaamonde - [21] Christian Wieser - [20] Daniel Handfield - [2] Erik J. van Nieukerken - [2] Gerfried Deschka - [1] Helmut Deutsch - [2] John R. Langmaid - [1] Kai Berggren - [4] Kate Perez - [35] Kurt Lechner - [1] Marko Mutanen - [3] Mayr A. - [1] Natalia Kirichenko - [2] Peter Huemer - [19] Stanislav Gomboc - [1] Willem Ellis - [1] Wolfgang Stark - [1]