The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Jean-François Landry, Vazrick Nazari, Jeremy R. Dewaard, Marko Mutanen, Carlos Lopez-Vaamonde, Peter Huemer and Paul D.N. Hebert Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology Zootaxa 2013-12-16;3749(1):1-93 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United States - [31]
Canada - [37]
Italy - [4]
Denmark - [1]
Austria - [11]
Germany - [9]
United Kingdom - [1]
Spain - [1]
Slovakia - [1]
Georgia - [1]
France - [1]
Armenia - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Collections Unit - [27] Jeremy deWaard - [9] Sujeevan Ratnasingham - [1] Scott E. Miller - [2] Axel Hausmann - [1] Bjoern Rulik - [2] Peter Huemer - [2] Jean-Francois Landry - [21] Chris Looney - [1] Marko Mutanen - [1]
CBG Collections Unit - [5] Jean-Francois Landry - [1] Scott E. Miller - [2] Jan Sumpich - [6] Axel Hausmann - [3] Peter Huemer - [10] Peter Buchner - [2] Lucas Sire - [1] Marko Mutanen - [1] Alfred Haslberger - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [22]
Centre for Biodiversity Genomics - [40]
Institut de Recherche sur la Biologie de l'Insecte - [1]
Landesmuseum Kaernten - [1]
Mined from GenBank, NCBI - [1]
National Museum of Natural History, Prague - [6]
Research Collection of Alfred Haslberger - [1]
Research Collection of Anssi & Leo Vahatalo - [1]
Research Collection of Ralf Meerkotter - [1]
Research Collection of Tina Schulz - [2]
Research Collection of Toni Mayr - [8]
SNSB, Zoologische Staatssammlung Muenchen - [3]
Smithsonian Institution, National Museum of Natural History - [5]
Tiroler Landesmuseen - [2]
Tiroler Landesmuseum Ferdinandeum - [1]
University of Oulu, Zoological Museum - [1]
Washington State Department of Agriculture - [1]
Zoologisches Forschungsmuseum Alexander Koenig - [2]
Sequencing Centers:
Biodiversity Institute of Ontario - [70] Centre for Biodiversity Genomics - [21]
Photography:
A. Haslberger - [1] Anssi Vähätalo, Leo Vähätalo, Jari-Pekka Kaitila - [1] CBG Photography Group - [9] Chloe Martin - [1] Jaclyn McCormick - [8] Jan Sumpich - [6] Jean-Francois Landry - [7] Lepidoptera photo group - [1] Libby Avis - [2] Lisa Bartels - [1] Marko Mutanen - [1] R. Meerkoetter - [1] Richard Wilson - [5] Vazrick Nazari - [14] photo work group Dr. Axel Hausmann - [2]
Collectors:
A. Haslberger - [1] A. Hausmann - [2] A.S. Hunt - [1] Anssi Vahatalo - [1] B Landry - [3] Biobus 2011 - [1] Bryan Scanga - [3] Ch. - [1] Christina Lui - [1] D Holden - [10] D. - [1] D.C.Ferguson - [1] D.Faser - [1] Daniel Pigeon - [1] Dave Holden - [2] Diane MacLean - [1] Doczkal & Ssymank - [1] F.Lui - [1] Friebe Georg - [2] Guilhem Parmain - [1] Hartmut Roweck - [2] Hiermann Ulrich - [2] Holden - [1] Huemer P. - [3] J.Brown - [1] JF Landry - [3] Jan Sumpich - [1] Jean-Francois Landry - [1] Joshua Kohn - [5] L Mavin & M Young - [8] L. Ramsay - [1] L.Avis - [2] Leo Vahatalo - [1] Mayr A. - [3] N.Bloomfield - [5] Nikolay Savenkov - [1] Ole Karsholt - [1] Peter Farrell - [2] Philip Hebert - [3] R. Meerkotter - [1] R.Avis - [2] Rachal Fretz - [1] Richard Wilson - [5] Richter Ignac - [1] Rulik et al - [2] S.Bunge - [2] S.E.Miller - [1] Schulz T. - [2] Siegel C. - [1] Tihomirova - [1] W.E.Steiner - [1] Wieser - [1]
Specimen Identification:
Alfred Haslberger - [1] Angela Telfer - [2] Axel Hausmann - [4] Chloe Martin - [1] Christian Wieser - [1] Gergin A. Blagoev - [3] Jan Sumpich - [6] Jari Kaitila - [1] Jean-Francois Landry - [23] Kate Perez - [19] Libby Avis - [2] Marko Mutanen - [1] Paul Hebert - [1] Peter Huemer - [11] Renee Miskie - [1] Richard L. Wilson - [3] USNM Curators - [1] USNM curators - [1]