Please note: Due to a scheduled maintenance, BOLD Systems will be offline from Friday Apr 26, 2024 4pm EDT to Sunday Apr 28, 2024 7pm EDT. We apologize for the inconvenience.
You've been logged out. Click here to log back in.
The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Marko Mutanen, Axel Hausmann, Paul D. N. Hebert, Jean-François Landry, Jeremy R. de Waard and Peter Huemer Allopatry as a Gordian Knot for Taxonomists: Patterns of DNA Barcode Divergence in Arctic-Alpine Lepidoptera PLoS ONE 2012-10-11;7(10):e47214 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Norway - [3]
Finland - [14]
Austria - [13]
Germany - [10]
Montenegro - [3]
Italy - [1]
France - [1]
DATA MANAGERS:
Public Data:
Private Data:
Scott E. Miller - [1] Andreas Segerer - [3] Arild Johnsen - [2] Peter Huemer - [7] Torbjorn Ekrem - [1] CBG Project Management Team - [1] Marko Mutanen - [13]
Marko Mutanen - [3] Wolfgang Stark - [1] Alfred Haslberger - [3] Andreas Segerer - [4] Peter Huemer - [5] Carlos Lopez-Vaamonde - [1]
Finnish Museum of Natural History, Zoological Museum - [1]
Landesmuseum Kaernten - [3]
NTNU University Museum, Department of Natural History - [1]
Research Collection of Alain Cama - [1]
Research Collection of Alfred Haslberger - [4]
Research Collection of Jukka Tabell - [1]
Research Collection of Peter Lichtmannecker - [2]
Research Collection of Thomas Guggemoos - [3]
Research Collection of Wolfgang Stark - [1]
SNSB, Zoologische Staatssammlung Muenchen - [1]
Smithsonian Institution, National Museum of Natural History - [1]
Tiroler Landesmuseum Ferdinandeum - [9]
University of Copenhagen, Natural History Museum of Denmark, Zoological Museum - [3]
University of Oslo, Natural History Museum - [2]
University of Oulu, Zoological Museum - [11]
Sequencing Centers:
Centre for Biodiversity Genomics - [42] Unknown - [1]
Photography:
A Haslberger - [1] A. Haslberger - [2] Aina Maerk Aspaas - [1] CBG Photography Group - [1] Carlos Lopez Vaamonde - [1] Christian Wieser - [1] G. Rotheneder - [1] Hymenoptera Photo Group - [1] Jaclyn McCormick - [3] Lauren Van Patter/Jaclyn McCormick - [1] Leif Aarvik - [1] Marko Mutanen - [2] Megan Swan - [4] Michel Billard - [1] Mikko Pentinsaari - [3] Wieser Ch. - [1] kberggr@online.no - [1]
Collectors:
A. Haslberger - [3] B. Winter - [1] C. Hviid - [3] Carl Fredrik - [1] Ch. - [3] Deutsch Helmut - [1] E.Jackh - [1] Franz Theimer - [1] Huemer P. - [8] Jukka Tabell - [1] K. Larsen - [2] Kai Berggren - [1] Leif Aarvik - [1] Leo Sippola - [1] Luehr - [1] M. BILLARD - [1] Marko Mutanen - [11] Ole Karsholt - [3] Panu Vaelimaeki - [5] Peter Lichtmannecker - [2] Thomas Guggemoos - [3] Tomi Mutanen - [1] Wieser - [3] lgt. W.Stark - [1]
Specimen Identification:
Alfred Haslberger - [3] Andreas Segerer - [6] Cama Alain - [1] Christian Wieser - [3] E. Jackh - [1] Jukka Tabell - [1] Kai Berggren - [1] Kate Perez - [1] Lauri J. Kaila - [2] Leif Aarvik - [2] Marko Mutanen - [13] Peter Huemer - [9] Peter Lichtmannecker - [1] Wolfgang Stark - [1]