The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United Kingdom - [4]
Germany - [12]
Austria - [6]
Finland - [3]
Italy - [6]
Netherlands - [7]
Norway - [11]
Portugal - [2]
Sweden - [6]
France - [5]
DATA MANAGERS:
Public Data:
Private Data:
Paul D.N. Hebert - [3] Peter Huemer - [8] Marko Mutanen - [3] Andreas Segerer - [9] Camiel Doorenweerd - [7] Torbjorn Ekrem - [4] Axel Hausmann - [3] Arild Johnsen - [3] Sonia AF Ferreira - [2] Wolfgang Stark - [2] Carlos Lopez-Vaamonde - [4] Matthew P Besley - [1] Marten Klinth - [3]
Thor H Ringsby - [3] CBG Collections Unit - [3] May Bente Brurberg - [1] Carlos Lopez-Vaamonde - [1] Stefano Scalercio - [2]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [2]
NTNU University Museum, Department of Natural History - [4]
Natural History Museum, London - [4]
Naturalis Biodiversity Center - [7]
Norwegian Institute for Agricultural and Environmental Research - [1]
Research Center in Biodiversity and Genetic Resources - [2]
Research Collection of Alain Cama - [1]
Research Collection of Alfred Haslberger - [1]
Research Collection of Carlos Lopez Vaamonde - [4]
Research Collection of Hartmut Wegner - [1]
Research Collection of Kai Berggren - [3]
Research Collection of Theo Gruenewald - [2]
Research Collection of Wolfgang Stark - [2]
SNSB, Zoologische Staatssammlung Muenchen - [8]
Station Linne - [3]
Tiroler Landesmuseum Ferdinandeum - [7]
University of Oulu, Zoological Museum - [3]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [35] GATC Biotech AG - [1] Naturalis Biodiversity Center - [7]
Photography:
CBG Robotic Imager - [6] Carlos Lopez Vaamonde - [1] DNA barcoding facility - [2] Erik Bostrom - [1] Even Sannes Riiser - [1] G. Rotheneder - [2] Giuseppe Rijllo - [2] Jaclyn McCormick - [4] Jay Cossey - [1] Jules Dessart-Pardon - [4] Kai Berggren - [3] Naturalis DNA barcoding facility - [6] Peter Huemer - [1] Rick Turner - [1] S. Heim - [1] Sondre Dahle - [1] ZSM Photography Team - [5]
Collectors:
A. CAMA - [1] Alfred Haslberger - [1] Ana Rita Goncalves - [2] Andreas Werno - [1] Anna Carlemalm - [2] Berggren - [2] C. Doorenweerd & W. Moerland - [2] Carl Fredrik - [1] Carlos Lopez Vaamonde - [4] Chris Fletcher - [1] Deirdre Kerdraon - [2] Doorenweerd - [5] Dr. Andreas H. Segerer - [2] Dr. Theo Gruenewald - [2] E. Stur - [2] Franz Theimer - [1] Gaia Banelyte - [1] Gayk - [2] Hartmut Wegner - [1] Huemer P. - [8] Inez Januszczak - [1] Kai - [2] Kai Berggren - [1] Laura Sivess - [1] Luehr - [1] MSP 92 - [1] Marko Mutanen - [3] Martin Corley - [2] Panu Vaelimaeki - [2] Peter Nilsson - [1] Robin Barfoot - [1] Rudi Tannert - [1] SMP 496 - [1] Sonia Ferreira - [2] Sverre Kobro - [1] T. Ekrem - [2] T.H. Ringsby and B.-E. Saether - [3] V - [2] V. Gayk - [1] lgt. W.Stark - [2]
Specimen Identification:
Andreas Segerer - [9] Axel Hausmann - [3] Cama Alain - [1] Camiel Doorenweerd - [7] Carlos Lopez-Vaamonde - [2] David C. Lees - [1] Kai Berggren - [3] Kate Perez - [3] Leif Aarvik - [1] Lotta AMELIE Moerch - [2] Marko Mutanen - [3] Marten Klinth - [3] Martin Corley - [2] Peter Huemer - [8] Renee Miskie - [5] Sverre Kobro - [1] Wolfgang Stark - [2]