The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
P. D. N. Hebert, J. R. deWaard and J.-F. Landry DNA barcodes for 1/1000 of the animal kingdom Biology Letters 2009-12-16;6(3):359-362 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [55]
Germany - [21]
Turkey - [5]
Norway - [2]
United Kingdom - [4]
Italy - [4]
Finland - [4]
Croatia - [2]
Austria - [11]
Mongolia - [1]
Switzerland - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Collections Unit - [27] Kenneth H Stead - [1] Beverly Mcclenaghan - [1] Evgeny V. Zakharov - [2] Marko Mutanen - [3] Peter Huemer - [11] Axel Hausmann - [26] Arild Johnsen - [2] Sujeevan Ratnasingham - [1] Paul Hebert - [4] Andreas Segerer - [1] Jeremy deWaard - [21] Alex Smith - [1]
Kenneth H Stead - [2] Axel Hausmann - [1] Gunnar Brehm - [1] Juerg Schmid - [1] Peter Huemer - [2] Arild Johnsen - [1] Marko Mutanen - [1] Wolfgang Stark - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LOWCE281-06 {Eupithecia intricata}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Pacific Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [4]
Centre for Biodiversity Genomics - [46]
Croatian Natural History Museum - [1]
Landesmuseum Kaernten - [1]
Mined from GenBank, NCBI - [1]
Naturmuseum Suedtirol - [1]
Phyletisches Museum Jena - [1]
Research Collection of Alfred Haslberger - [1]
Research Collection of Daniel Handfield - [2]
Research Collection of Joerg Gelbrecht - [2]
Research Collection of Kai Berggren - [1]
Research Collection of M. Alex Smith - [1]
Research Collection of S. Birrer - [1]
Research Collection of Theo Gruenewald - [1]
Research Collection of Wolfgang Stark - [1]
Royal British Columbia Museum - [4]
SNSB, Zoologische Staatssammlung Muenchen - [23]
Tiroler Landesmuseen - [10]
Tiroler Landesmuseum Ferdinandeum - [1]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [1]
University of Oslo, Natural History Museum - [2]
University of Oulu - [1]
University of Oulu, Zoological Museum - [3]
Sequencing Centers:
Biodiversity Institute of Ontario - [99] Centre for Biodiversity Genomics - [4] LGC Genomics, Germany - [1] Unknown - [1]
Photography:
Alexandra Knapp - [2] CBG Photography Group - [23] G. Rotheneder - [1] J. Schmid - [1] Jaclyn McCormick - [5] Jeremy deWaard - [6] Kai Berggren - [1] Krsiten Mancuso - [7] Lepidoptera photo group - [1] Marko Mutanen - [1] Minna Orreveteläinen - [1] Nick Jeffery - [3] Rick Turner - [5] ZSM Hymenoptera Photography Group - [1] ZSM Photography Team - [19] photo work group Dr. Axel Hausmann - [6]
Collectors:
12-Jul-13 - [1] A. Hausmann - [2] A. W. Thomas - [2] A.Borisenko - [1] Aarvik - [1] Alfred Haslberger - [1] Aud I. - [1] Axel Hausmann - [1] B. - [1] B. McClenaghan - [1] BIObus 2008 - [17] BIObus 2010 - [2] C. S. Guppy - [1] CBG Collections Staff - [2] Ch. - [1] Daniel Handfield - [2] Dr. Andreas H. Segerer - [1] Dr. D. Kolligs - [1] Dr. Loebel - [3] Dr. Theo Gruenewald - [1] Fischer - [1] G. Riedel - [1] GAC 0157 - [1] Hausmann - [2] Huemer P. - [10] I. Mihoci - [1] J. Gelbrecht - [2] J.Cossey - [1] J.R. - [6] J.Sones - [1] Jean-Francois Landry - [1] Jeremy deWaard - [2] K. Ambil - [8] K.H.Stead - [3] K.Perez - [1] Kai Berggren - [1] Karl Ambil - [1] Khishigdelger Enkhtur - [1] Leif - [1] Leif Aarvik - [1] M. Vajdic - [1] Marko Mutanen - [3] N.Dudley - [3] N.Zahm - [1] NRL 0088 - [1] P.D.N. Hebert - [2] Panu Vaelimaeki - [2] Paul Hebert - [8] RAB 159 - [1] Rainer Busse - [1] S. Beshkov & T. Drechsel - [2] SPC 91 - [1] Stefan Birrer - [1] Tomi Mutanen - [1] V. Gayk - [1] Wieser - [1] Wiesmair - [1] deWaard - [6] lgt. W.Stark - [1]
Specimen Identification:
Alex Smith - [1] Andreas Segerer - [2] Anthony W. Thomas - [2] Axel Hausmann - [22] Benjamin Schattanek Wiesmair - [1] Christian Wieser - [1] Daniel Handfield - [2] Detlef Kolligs - [1] Evgeny V. Zakharov - [2] Iva Mihoci - [1] Jean-Francois Landry - [1] Joerg Gelbrecht - [2] Kai Berggren - [1] Kate Perez - [9] Leif Aarvik - [2] Marko Mutanen - [4] Paul Hebert - [8] Peter Huemer - [11] S. Birrer - [1] Wolfgang Stark - [1]