The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Jeremy R. deWaard, Valerie Levesque-Beaudin, Stephanie L. deWaard, Natalia V. Ivanova, Jaclyn T.A. McKeown, Renee Miskie, Suresh Naik, Kate H.J. Perez, Sujeevan Ratnasingham, Crystal N. Sobel, Jayme E. Sones, Claudia Steinke, Angela C. Telfer, Andrew D. Young, Monica R. Young, Evgeny V. Zakharov, and Paul D.N. Hebert Expedited assessment of terrestrial arthropod diversity by coupling Malaise traps with DNA barcoding. Genome 2018-09-26 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [177]
United States - [142]
Italy - [5]
United Kingdom - [1]
Germany - [49]
Finland - [7]
Austria - [14]
Greenland - [3]
Exception - Quarantine Capture - [1]
Russia - [3]
Bulgaria - [2]
Norway - [3]
Liechtenstein - [1]
Portugal - [5]
France - [12]
Kyrgyzstan - [1]
Greece - [1]
DATA MANAGERS:
Public Data:
Private Data:
Lifescanner Team - [1] Gregory R. Pohl - [1] Sonia AF Ferreira - [1] Arild Johnsen - [3] Jeremy deWaard - [16] Jean-Francois Landry - [75] CBG Project Management Team - [70] Stefan Schmidt - [1] Beverly Mcclenaghan - [1] Peter Huemer - [8] Andreas Segerer - [14] Axel Hausmann - [1] CBG Collections Unit - [2] Sujeevan Ratnasingham - [1] Helena K. Wirta - [3] Chris Looney - [2] Matthias Nuss - [2] Vazrick Nazari - [50] Marko Mutanen - [6] Paul Hebert - [1] Scott E. Miller - [1]
Jean-Francois Landry - [88] Pierre henri Fabre - [1] CBG Project Management Team - [5] Kenneth H Stead - [1] CBG Collections Unit - [9] Thibaud Decaens - [1] Andreas Segerer - [22] Peter Huemer - [10] Carlos Lopez-Vaamonde - [10] Alfred Haslberger - [9] Vazrick Nazari - [7] Jan Sumpich - [1] Wolfgang Stark - [1] Kurt Lechner - [1] Marko Mutanen - [1] Kelsey J Mcgurrin - [1]
Canadian Forest Service, Northern Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [195]
Centre for Biodiversity Genomics - [94]
Landesmuseum Kaernten - [4]
Mined from GenBank, NCBI - [1]
Museum Zoological Helsinki - [17]
National Museum of Natural History, Prague - [1]
Natural History Museum, London - [1]
Nova Scotia Museum - [2]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of A. Mayr - [1]
Research Collection of Alfred Haslberger - [15]
Research Collection of Andreas Stuebner - [2]
Research Collection of Beverly Mcclenaghan - [1]
Research Collection of Carlos Lopez Vaamonde - [10]
Research Collection of Charles Bird - [1]
Research Collection of George Balogh - [3]
Research Collection of Gerard Labonne - [2]
Research Collection of James Wiker - [1]
Research Collection of Jeremy deWaard - [1]
Research Collection of Ken Stead - [1]
Research Collection of Kurt Lechner - [1]
Research Collection of Peter Buchner - [1]
Research Collection of Peter Lichtmannecker - [1]
Research Collection of Thomas Guggemoos - [2]
Research Collection of Valeriu Albu - [7]
Research Collection of Wolfgang Stark - [1]
SNSB, Zoologische Staatssammlung Muenchen - [29]
Smithsonian Institution - [2]
Tiroler Landesmuseum Ferdinandeum - [12]
University of Copenhagen - [3]
University of Guelph - [1]
University of Maryland - [1]
University of Oslo, Natural History Museum - [3]
University of Oulu - [1]
University of Oulu, Zoological Museum - [6]
Washington State Department of Agriculture - [2]
Sequencing Centers:
Canadian Centre for DNA Barcoding - [1] Centre for Biodiversity Genomics - [400] University of Guelph - [1]
Photography:
A Haslberger - [1] A. Haslberger - [2] Alfred Haslberger - [6] Andreas K. Stuebner - [1] Andreas Segerer - [12] Antoine Maignan - [2] Buchner - [1] CBG Photography Group - [26] CBG Robotic Imager - [9] Carlos Lopez Vaamonde - [3] Christian Wieser - [1] Deneka, A. J. - [1] Donald Hobern - [1] Gérard Labonne - [1] G. Labonne - [1] G. Rotheneder - [1] Hymenoptera Photo Group - [1] J. Troubridge - [1] Jaclyn McCormick - [4] Jan Sumpich - [1] Jean-Francois Landry - [101] Jenni Moilanen - [1] Jeremy deWaard - [1] Jules Dessart-Pardon - [1] Kai Berggren - [1] Kerstin Wehinger - [1] Lisa Bartels - [58] Lotta Mörch - [1] Louison Cama - [3] MTD Lepidoptera Section - [1] Mark Dreiling - [1] Megan Swan - [2] Piia Partanen - [3] Richard Wilson - [11] Rick Turner - [1] Riikka Jarkko - [1] Vazrick Nazari - [57] ZSM Photography Team - [3] kberggr@online.no - [2]
Collectors:
A. Haslberger - [9] A. Stuebner - [2] A.M. Ellison - [1] Aaron S. Hunt - [5] Adams - [1] Alain Charpentier - [2] Alfred Haslberger - [6] Anttoni Mutanen - [1] B Landry - [3] B Landry - [2] B Wright - [2] B. & J.F. Landry - [4] B. Landry - [1] B. McClenaghan - [1] B. Naday - [1] B. Scholtens - [6] B. Wright - [6] B.McLean - [2] B.Wijdeven - [5] BIO Collections - [1] BIOBus 2012 - [4] BIObus 2008 - [1] BIObus 2013 - [1] BIObus 2014 - [2] Buchner - [1] Buchner P. - [1] C.D. Bird - [9] C.S. Guppy - [1] CD Bird - [1] Carlos Lopes Vaamonde - [1] Carlos Lopez Vaamonde - [8] Carlos Lopez Vaamonde & Thomas Huet - [1] Ch. - [4] Chrystal Simon - [14] D. - [4] D.G. Holden - [7] Dave G. Holden - [11] Dickson - [1] Donald G. Hobern - [1] Dr. Andreas H. Segerer - [15] E.C. Knudson - [2] EJ van Nieukerken & S Richter - [1] Eva; Allingham - [2] Evgeny Zakharov - [2] Finkelstein - [1] G. Baldizzone - [1] G. Labonne - [2] G. Sellmayer - [1] G.R. - [3] GJ Balogh - [4] GR Pohl - [4] H.L. - [1] Harold Brenner - [1] Heidi Brown - [2] Holden - [4] Horna Lowell - [2] Huemer P. - [11] I. Iliev - [2] J Adams & I Finkelstein - [1] J F Landry - [1] J Powell - [1] J-F Landry - [1] J-F Landry & GR Pohl - [1] J. Glaser - [12] J. Vargo - [6] J.-F. & B. Landry - [2] J.-F. Landry - [35] J.-F. Landry & D. Holden - [1] J.-F. Landry & V. Nazari - [4] J.F. & B. Landry - [1] J.F. Landry - [1] J.Foster - [1] J.R. - [1] JF & B Landry - [3] JF Landry - [29] JW Brown - [11] James R Wiker - [1] Jan Sumpich - [1] Jean-Francois Landry - [7] Jorge Rosete - [1] K Mikkola - [15] K. H. Stead - [1] K. Mandery - [1] Kai Berggren - [3] Kauri Mikkola - [2] Keith Pickthorn - [6] Knut Hoven - [1] L Kaila - [4] L. Grevstad - [1] Lechner K. - [1] M. Oprandi - [1] Mark Dreiling - [1] Marko Mutanen - [7] Mayr A. - [1] N.D.F. Grindley - [1] Nestori Mutanen - [1] O. Karsholt - [3] P.D.N. Hebert - [1] Panu Vaelimaeki - [2] Park Staff - [20] Patrik HERTZOG - [2] Peter Farrell - [1] Peter Lichtmannecker - [1] Pohl - [3] RW Hodges - [2] Rachel - [2] Richard Wilson - [12] Ryan Gregory - [1] S.Ferreira - [4] SMP 330 - [1] Steve Scott - [1] Stone Barns Center - [1] Thomas Guggemoos - [2] Tomi Mutanen - [1] V+M Albu - [1] VMSA Albu - [1] VSA Albu - [5] Val & Magda Albu - [1] Valeriu Albu - [1] Werner Wolf - [12] Wieser - [4] deWaard - [1] lgt. W.Stark - [1]
Specimen Identification:
Alfred Haslberger - [9] Andreas Segerer - [35] Andreas Stuebner - [1] Angela Telfer - [39] BOLD ID Engine - [1] Carlos Lopez-Vaamonde - [10] Christian Wieser - [4] Dick Wilson - [3] Eric H Lagasa - [1] Gerard Labonne - [2] Gergin A. Blagoev - [5] Ignac Richter - [1] Jean-Francois Landry - [135] Jeremy deWaard - [1] Jerome Moriniere - [1] Kai Berggren - [3] Kate Perez - [17] Kenneth H Stead - [1] Kurt Lechner - [1] Marko Mutanen - [7] Martin Corley - [1] Mayr A. - [1] Peter Buchner - [2] Peter Huemer - [11] Renee Miskie - [1] Richard L. Wilson - [5] Taxonomy Unit - [4] Vazrick Nazari - [67] Wolfgang Stark - [1]