The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [182]
United States - [260]
Unrecoverable - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jeremy deWaard - [4] Evgeny V. Zakharov - [2] J. Donald Lafontaine - [2] CBG Project Management Team - [1] Akito Y. Kawahara - [1] Reza Zahiri - [1] Scott E. Miller - [3]
CBG Collections Unit - [93] Naomi Delury - [58] Scott E. Miller - [13] CBG Project Management Team - [43] Jeremy deWaard - [167] Mat Seidensticker - [13] David L. Wagner - [13] Daniel Handfield - [2] J. Donald Lafontaine - [3] Evgeny V. Zakharov - [12] Akito Y. Kawahara - [2] Charles S Walker - [9] Kenneth H Stead - [1] Kelsey J Mcgurrin - [2]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LNAUU1479-15 {Abagrotis reedi}
License:
CreativeCommons Attribution (2015)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Pacific Forestry Centre - [6]
Canadian National Collection of Insects, Arachnids and Nematodes - [69]
Centre for Biodiversity Genomics - [132]
Colorado State University, C. P. Gillette Museum of Arthropod Diversity - [3]
MPG Ranch - [9]
Mined from GenBank, NCBI - [8]
Pacific Agri-Food Research Centre - [24]
Research Collection of Daniel Handfield - [4]
Research Collection of Ian Watkinson - [13]
Research Collection of J. B. Sullivan - [8]
Research Collection of Jeremy deWaard - [4]
Research Collection of Jim Troubridge - [41]
Research Collection of Tomas Mustelin - [1]
Royal British Columbia Museum - [10]
Smithsonian Institution, National Museum of Natural History - [37]
University of Alberta, Strickland Museum of Entomology - [17]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [5]
University of Connecticut - [13]
University of Maryland - [5]
Sequencing Centers:
Centre for Biodiversity Genomics - [341]
Photography:
Alison Forde - [1] B. Mccomb - [1] CBG Photography Group - [127] CBG Robotic Rig - [83] Christian Connors - [1] Daniel Handfield - [3] David L. Wagner - [10] Ian Watkinson - [3] J.Gill - [2] Jaclyn McCormick - [4] James Sullivan - [6] Jay Cosey - [3] Jay Cossey - [1] Jeremy deWaard - [24] Lepidoptera Unit - [5] Leptree Project Group - [3] Liam Cardarelli-Goddard - [1] M. Seidensticker - [9] Mat Seidensticker - [7] Rick Turner - [1] Sam Jaffe - [1] T. A. Matson - [1] Tim Whittier - [1]
Collectors:
A. W. Thomas - [6] A.Blanchard - [1] A.Borisenko - [2] Alexela Hoyt - [2] Ash(ley) Cale - [1] Aud I. - [9] Aud I. Fischer - [1] Austin - [2] Austin; Laine - [7] B. Maples - [9] BIObus 2009 - [2] BIObus 2010 - [1] Baker - [9] BioBus 2011 - [1] Biobus 2010 - [2] Biobus 2011 - [1] C. D. Ferris - [1] C. Harp - [1] C. Schmidt & R. Nagle - [2] C.D. Ferris - [1] C.E.Harp - [1] CBG Collections Staff - [1] Charles Melton - [2] Christian Connors - [4] Cole Ivie - [1] D. Handfield - [1] D. Lafontaine and J. Troubridge - [1] D. Lawrie - [1] D.C.Ferguson - [1] D.Handfield - [1] Dave Wagner - [4] David L. Wagner and Tanner Matson - [1] David Wagner - [5] David Wagner and Kevin Keegan - [1] David Wagner and Tanner Matson - [1] Doug - [1] E. Horna Lowell - [3] Emma - [1] Eric H. Metzler - [2] Eva; Kjurstens - [1] Fischer - [9] G. Anweiler - [2] G. Kung - [2] G.G. Anweiler - [15] Gergin Blagoev - [1] Gershenz - [5] Giar-Ann - [24] Handfield D. - [2] Heraty Lab - [5] Heraty lab - [1] Horna Lowell - [1] Ian Watkinson - [13] J. DeWaard - [1] J. Heraty - [14] J. Jones - [4] J. Perez - [4] J. Troubridge - [74] J. Troubridge and L. Crabo - [3] J.B.Sullivan - [8] J.Cossey - [3] J.Glaser - [1] J.McCormick - [3] J.P. Crolla - [1] J.R. - [24] J.R.Heitzman - [1] J.Robertson - [1] J.Sones - [3] Jacob; Perez - [1] James K. Adams - [1] James Roberts - [1] James Vargo - [1] Jen and Hilary Bayer - [1] Jesse - [3] Jesse; Tang - [6] Jim Roberts - [1] Jones - [1] Julia - [1] K. Dominguez - [14] K.H.Stead - [1] K.Perez - [2] K.Richers - [2] Kate Stone - [1] Kirby England - [1] Korneyev - [3] Kung - [24] LACM - [4] Laine - [2] Laura Gaudette - [2] Leslie - [5] M. Mullen - [1] M. Scofield - [7] M. Seidensticker - [8] M.E.Blanchard - [1] M.G.Pogue - [2] M.L. Kirst - [1] M.Pogue - [1] Mat Seidensticker - [3] Max Ferlauto - [2] Michael - [1] Michael Sharkey - [1] Moria Robinson - [1] N. Bloomfield - [1] N.Bloomfield - [1] NHMLAC - [4] Nathan - [6] Norman - [5] P.A & E. Opler - [2] P.J.Landolt - [3] P.Z.Goldstein - [23] Paul D.N. Hebert - [1] R Duncan: E St Louis - [1] R. Allingham - [1] R.Robertson - [1] Ron Robertson - [3] Ryan Stuart - [1] S. Derkarabetian - [3] S. Heacox - [14] S. Korneyev - [9] S.McCubbin - [2] S.Mustelin - [1] Saul-Gershenz - [5] Schmidt C. & Jaeger C. - [1] Severyn - [3] Sharkey - [1] T Whittier - [1] T. Dickel - [1] T. Mustelin - [4] T. Shute - [1] T.E.Dimock - [1] T.M. Gilligan & C.E. Harp - [2] T.Mustelin - [1] T.S. Dickel - [8] Tanner Matson - [2] Yanega - [1] and Ash Cale - [1] and David Wagner - [1] and Jakob Palmer - [1] and Koe Tsutsumi - [1] and Purbita Saha - [2] deWaard - [24]
Specimen Identification:
Anthony W. Thomas - [6] BOLD ID Engine - [2] BOLD Identification System [2017] - [1] BOLD Identification System [2018] - [2] BOLD Identification System [2020] - [1] BOLD Identification System [2023] - [2] BOLD Identification System [] - [54] BOLD Machine Learning Tool Kit - [5] Christian Schmidt - [1] Crispin S. Guppy - [3] Daniel Handfield - [3] David L. Wagner - [13] Evgeny V. Zakharov - [2] Gergin A. Blagoev - [1] J. Donald Lafontaine - [29] James B. Sullivan - [8] Mathew Seidensticker - [9] P. J. Landolt - [2] Paul D.N. Hebert - [1] R. Duncan - [1] Ron Robertson - [3] Spencer K. Monckton - [63] Tomas Mustelin - [1] USNM Curators - [30]