The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Mikko Pentinsaari, Gergin A. Blagoev, Ian D. Hogg, Valerie Levesque-Beaudin, Kate Perez, Crystal N. Sobel, Bryan Vandenbrink, Alex Borisenko A DNA Barcoding Survey of an Arctic Arthropod Community: Implications for Future Monitoring Insects 2020-01-09;11(46):1-18 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [112]
Sweden - [3]
Norway - [28]
United Kingdom - [7]
Germany - [45]
Finland - [156]
Aland Islands - [6]
Austria - [31]
Italy - [17]
Bulgaria - [2]
Netherlands - [2]
Russia - [2]
Slovakia - [1]
France - [20]
Croatia - [2]
Slovenia - [1]
Kyrgyzstan - [1]
Czechia - [3]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [42] Jean-Francois Landry - [5] Axel Hausmann - [9] Marko Mutanen - [103] Peter Huemer - [36] Jing V Leong - [2] Philip GK Hoffman - [4] Juha Salokannel - [1] CBG Collections Unit - [36] Daniel Handfield - [3] Jeremy deWaard - [3] Gregory R. Pohl - [11] Carlos Lopez-Vaamonde - [13] Torbjorn Ekrem - [8] Andreas Segerer - [37] Paul D.N. Hebert - [4] Arild Johnsen - [15] Nikolaus U Szucsich - [3] Barcoding Naturalis - [2] Charles S Walker - [3] Wolfgang Stark - [7] Thibaud Decaens - [1] Jaakko Kullberg - [1] Gergin A. Blagoev - [2] Ben W Price - [1] Steffen Roth - [3] Alfred Haslberger - [1] Dana Strasiftakova - [1] Sarah Adamowicz - [3] Ian Hogg - [3] Chris Looney - [1]
Albert Phillimore - [1] CBG Collections Unit - [1] Pierre henri Fabre - [1] Jean-Francois Landry - [1] Lyndall Pereira da Conceicoa - [1] Daniel Handfield - [21] Carlos Lopez-Vaamonde - [2] Natalia Kirichenko - [4] Marko Mutanen - [40] May Bente Brurberg - [2] Rodolphe Rougerie - [3] Sofian A Renoult - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LEFIG834-10 {Apotomis sauciana}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics