The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Mutanen, Marko; Aarvik, Leif; Huemer, Peter; Kaila, Lauri; Karsholt, Ole; Tuck, Kevin DNA barcodes reveal that the widespread European tortricid moth Phalonidia manniana (Lepidoptera: Tortricidae) is a mixture of two species Zootaxa 2012-04-09;3262(1):1-21 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United Kingdom - [3]
Germany - [8]
Finland - [4]
Austria - [4]
Canada - [3]
Norway - [6]
Italy - [3]
Portugal - [1]
France - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [3] Paul D.N. Hebert - [2] Marko Mutanen - [3] Andreas Segerer - [7] Peter Huemer - [6] Arild Johnsen - [3] Axel Hausmann - [1] Torbjorn Ekrem - [3] Sonia AF Ferreira - [1] Wolfgang Stark - [1] Carlos Lopez-Vaamonde - [1] Matthew P Besley - [1]
Marko Mutanen - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LEFIG218-10 {Thyraylia nana}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
NTNU University Museum, Department of Natural History - [3]
Natural History Museum, London - [3]
Private Collection of Alain Cama - [1]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Hartmut Wegner - [1]
Research Collection of Kai Berggren - [1]
Research Collection of Richard Heindel - [1]
Research Collection of Theo Gruenewald - [1]
Research Collection of Wolfgang Stark - [1]
SNSB, Zoologische Staatssammlung Muenchen - [5]
Tiroler Landesmuseum Ferdinandeum - [5]
University of Oslo, Natural History Museum - [2]
University of Oulu - [1]
University of Oulu, Zoological Museum - [3]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [29]
Photography:
Alain Cama - [1] Dawn Williams - [1] Erik Bostrom - [2] G. Rotheneder - [1] Jaclyn McCormick - [3] Kai Berggren - [2] Lauren Van Patter/Jaclyn McCormick - [1] Megan Swan - [1] Minna Orreveteläinen - [1] Peter Huemer - [1] ZSM Hymenoptera Photography Group - [1] ZSM Photography Team - [3]
Collectors:
19-Jun-13 - [1] Alain Cama - [1] Andreas Werno - [1] Anttoni Mutanen - [1] Carl Fredrik - [2] Dr David C. Lees - [1] Dr. Andreas H. Segerer - [2] Dr. Theo Gruenewald - [1] E. Stur - [1] Franz Theimer - [1] Hartmut Wegner - [1] Herbert Proese - [1] Huemer P. - [5] Kai Berggren - [1] Leif Aarvik - [1] Luehr - [2] M.Parsons - [1] Marko Mutanen - [4] Martin Corley & Rui Andrade - [1] Nestori Mutanen - [1] Oddvar Hanssen - [1] Park Staff - [2] Richard Heindel - [1] SMP 142 - [1] Steve Wells - [1] T. Ekrem - [1] lgt. W.Stark - [1]
Specimen Identification:
Alain Cama - [1] Andreas Segerer - [7] BOLD Identification System [] - [4] David C. Lees - [1] Kai Berggren - [4] Leif Aarvik - [1] Marko Mutanen - [4] Martin Corley - [1] Peter Huemer - [6] Richard Heindel - [1] Wolfgang Stark - [1]