The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Erik J van Nieukerken; Camiel Doorenweerd; Robert Hoare; Donald Ray Davis Revised classification and catalogue of global Nepticulidae and Opostegidae (Lepidoptera, Nepticuloidea) ZooKeys 2016-10-31;628(-):65-246 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Doorenweerd, Camiel; Nieukerken, Erik J. van; Hoare, Robert J. B. Phylogeny, classification and divergence times of pygmy leaf-mining moths (Lepidoptera: Nepticulidae): the earliest lepidopteran radiation on Angiosperms? Systematic Entomology 2016-10-31;42(1):267-287 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Paul D. N. Hebert, Thomas W. A. Braukmann, Sean W. J. Prosser, Sujeevan Ratnasingham, Jeremy R. deWaard, Natalia V. Ivanova, Daniel H. Janzen, Winnie Hallwachs, Suresh Naik, Jayme E. Sones and Evgeny V. Zakharov A Sequel to Sanger: amplicon sequencing that scales BMC Genomics 2018-03-27;19(219):0-0
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Finland - [3]
Belgium - [2]
Italy - [5]
Austria - [15]
France - [72]
Germany - [17]
Greece - [3]
United States - [3]
Canada - [41]
Azerbaijan - [1]
Bulgaria - [43]
New Zealand - [1]
Slovenia - [2]
Japan - [3]
South Korea - [4]
Netherlands - [1]
Norway - [7]
Russia - [5]
Malaysia - [1]
Georgia - [2]
DATA MANAGERS:
Public Data:
Private Data:
Erik J. van Nieukerken - [21] Marko Mutanen - [3] Peter Huemer - [13] Arild Johnsen - [7] CBG Project Management Team - [155] Andreas Segerer - [4] CBG Collections Unit - [16] Wolfgang Stark - [6]
Erik J. van Nieukerken - [2] Reza Zahiri - [2] Bjoern Rulik - [1] Peter Huemer - [1]
Senckenberg Natural History Collections Dresden, Museum of Zoology - [1]
Tiroler Landesmuseum Ferdinandeum - [3]
University of Oslo, Natural History Museum - [5]
University of Oulu, Zoological Museum - [3]
Zoologisches Forschungsmuseum Alexander Koenig - [1]
Sequencing Centers:
Canadian Centre for DNA Barcoding - [1] Centre for Biodiversity Genomics - [49] Naturalis Biodiversity Center - [23]
Photography:
CBG Photography Group - [1] CBG Robotic Imager - [2] Camiel Doorenweerd - [1] Christian Wieser - [9] Erik J. van Nieukerken - [10] G. Rotheneder - [6] Hymenoptera Photo Group - [1] Jaclyn McCormick - [2] Kai Berggren - [4] Naturalis DNA barcoding facility - [2]
Collectors:
A.Slater - [1] A.Voronkov - [5] Axel Hausman - [11] BIO Collections Staff - [2] CBG Collections Staff - [29] Camiel Doorenweerd & Kees van den Berg - [2] Camiel Doorenweerd et al. - [1] Ch. - [11] Christy Wu - [1] Courtney King - [1] Dimitris Zianis - [1] E.J. van Nieukerken - [6] E.J. van Nieukerken & C. Doorenweerd - [2] E.J. van Nieukerken & S. Richter - [4] E.J. van Nieukerken & T. Jin - [2] G. Baldizzone - [1] GBOL-Team SNSD - [1] Holden D. - [2] Huemer P. - [3] I. Iliev - [1] Ian Hogg - [1] Ilia University & ZFMK - [1] J.Sibbald - [1] Jisming See Shi Wei - [1] Kai Berggren - [4] L. & V. Penevi - [42] M.V. Kozlov & V. Zverev - [1] Marko Mutanen - [3] Mike Richardson - [2] N. Snegovaya - [1] P. Triberti - [1] Panu Vaelimaeki - [3] Parks Canada Staff - [1] Peter Lichtmannecker - [3] Petri Hirvonen - [1] Rein-Arne Golf - [2] Rodolphe Rougerie - [71] Svein Svendsen - [3] Thomas Guggemoos - [1] Tomi Mutanen - [1] W. Wittland - [1] Wieser - [11] lgt. W.Stark - [6]
Specimen Identification:
Andreas Segerer - [4] BOLD Identification System [2017] - [25] BOLD Identification System [2018] - [4] BOLD Identification System [2019] - [124] BOLD Identification System [] - [16] Christian Wieser - [11] Erik J. van Nieukerken - [23] Kai Berggren - [7] Marko Mutanen - [3] Peter Huemer - [3] Renee Miskie - [1] Reza Zahiri - [2] Stefan Schmidt - [1] T. Sobczyk - [1] Wolfgang Stark - [6]