The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Huemer, Peter; Karsholt, Ole; Mutanen, Marko DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae) ZooKeys 2014-04-24;404:91-111 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [39]
Italy - [7]
Netherlands - [2]
United States - [2]
Austria - [18]
Germany - [1]
Georgia - [1]
Portugal - [8]
United Kingdom - [1]
Cyprus - [2]
DATA MANAGERS:
Public Data:
Private Data:
Peter Huemer - [10] Axel Hausmann - [1] Camiel Doorenweerd - [2] Andreas Segerer - [1] Wolfgang Stark - [5] CBG Project Management Team - [38] Jean-Francois Landry - [1] Chris Looney - [2] CBG Collections Unit - [8]
Lyndall Pereira da Conceicoa - [1] Wolfgang Stark - [5] Leo Vahatalo - [1] Stefano Scalercio - [1] Peter Huemer - [5]
Canadian National Collection of Insects, Arachnids and Nematodes - [1]
Centre for Biodiversity Genomics - [46]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [1]
Landesmuseum Kaernten - [3]
Landessammlungen Niederosterreich - [5]
Naturalis Biodiversity Center - [2]
Naturmuseum Suedtirol - [1]
Research Collection of Leo Vahatalo - [1]
Research Collection of Wolfgang Stark - [5]
SNSB, Zoologische Staatssammlung Muenchen - [2]
Tiroler Landesmuseum Ferdinandeum - [11]
Washington State Department of Agriculture - [2]
Wellcome Sanger Institute - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [63] Naturalis Biodiversity Center - [2]
Photography:
Anssi Vahatalo - [1] CBG Robotic Imager - [7] CBG Robotic Rig - [1] Christian Wieser - [1] DNA barcoding facility - [1] Elisabeth Frank - [5] G. Rotheneder - [10] Giuseppe Rijllo - [1] Jaclyn McCormick - [1] Naturalis DNA barcoding facility - [1] Sanger BIOSCAN Team - [1] Vazrick Nazari - [1] photo work group Dr. Axel Hausmann - [1]
Collectors:
A. Hausmann - [1] Anssi Vahatalo - [1] Benjamin Price - [1] Buchner P. - [1] C. - [1] Ch. - [2] D.Faser - [36] Dave G. Holden - [1] Diane MacLean - [1] Doorenweerd - [2] Dr. Andreas H. Segerer - [1] F.Lui - [1] Holzschuh - [1] Huemer P. - [11] Infusino - [1] Jari-Pekka Kaitila - [1] Joana P. Cristovao - [1] John GARMAN - [1] L Mavin & M Young - [1] L. Ramsay - [36] Lasha-Giorgi Japaridze - [1] Leo Vahatalo - [1] Palombar - [8] Scalercio - [1] Wieser - [2] lgt. W.Stark - [10]
Specimen Identification:
Allison Brown - [1] Andreas Segerer - [1] Axel Hausmann - [1] BOLD ID Engine - [1] CBG Taxonomy Unit - [7] Camiel Doorenweerd - [2] Christian Wieser - [3] Eric H Lagasa - [1] Gergin A. Blagoev - [37] Jean-Francois Landry - [1] Leo Vahatalo - [1] Peter Buchner - [1] Peter Huemer - [11] Wolfgang Stark - [10]