The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [18]
Finland - [3]
Czech Republic - [2]
Lithuania - [1]
North Korea - [1]
Germany - [1]
Norway - [1]
Austria - [1]
DATA MANAGERS:
Public Data:
Private Data:
Karel Spitzer - [4] Jeremy deWaard - [2] Marko Mutanen - [3] Andreas Segerer - [1] CBG Project Management Team - [10] CBG Collections Unit - [4] Wolfgang Stark - [1] Sarah Adamowicz - [1] Arild Johnsen - [1] Gregory R. Pohl - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LEFIG817-10 {Argyroploce lediana}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Academy of Sciences of the Czech Republic, Biology Centre - [4]
Canadian Forest Service, Northern Forestry Centre - [2]
Canadian National Collection of Insects, Arachnids and Nematodes - [1]
Centre for Biodiversity Genomics - [14]
Research Collection of Wolfgang Stark - [1]
SNSB, Zoologische Staatssammlung Muenchen - [1]
Smithsonian Institution, National Museum of Natural History - [1]
University of Oslo, Natural History Museum - [1]
University of Oulu, Zoological Museum - [3]
Sequencing Centers:
Centre for Biodiversity Genomics - [26]
Photography:
CBG Photography Group - [2] CBG Robotic Imager - [2] Deneka, A. J. - [1] G. Rotheneder - [1] Jaclyn McCormick - [1] Kai Berggren - [1]
Collectors:
A. Lozan - [2] Arctic & Boreal Entomology - [1] BIObus 2013 - [3] C.Wong - [1] D.: Dunne - [1] Franz Theimer - [1] G.R. - [1] H.Hansel - [1] J. Jaros - [4] K. Spizer - [3] Kai Berggren - [1] Macaulay - [1] Marko Mutanen - [3] Park Staff - [3] Parks Canada - [4] Pohl - [1] S. - [1] S. Cannings - [2] S.Davidson - [1] lgt. W.Stark - [1]
Specimen Identification:
Andreas Segerer - [1] BOLD Identification System [] - [13] Gergin A. Blagoev - [3] Gregory R. Pohl - [2] Kai Berggren - [1] Marko Mutanen - [3] Spencer K. Monckton - [1] Wolfgang Stark - [1]