The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United Kingdom - [2]
Germany - [14]
France - [1]
Finland - [9]
Italy - [5]
North Macedonia - [2]
Austria - [7]
Norway - [3]
Canada - [16]
Croatia - [1]
Spain - [1]
Netherlands - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jean-Francois Landry - [16] Paul D.N. Hebert - [1] Andreas Segerer - [10] Marko Mutanen - [8] Peter Huemer - [11] Sangmi Lee - [1] Torbjorn Ekrem - [1] Charles S Walker - [2] Bjoern Rulik - [2] Arild Johnsen - [3] Scott E. Miller - [2] Jari Junnilainen - [1] Wolfgang Stark - [2] David Lees - [1]
Marko Mutanen - [1] Erik J. van Nieukerken - [1] Bjoern Rulik - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [16]
Landesmuseum Kaernten - [2]
Mined from GenBank, NCBI - [2]
Mississippi Entomological Museum - [1]
NTNU University Museum, Department of Natural History - [1]
Natural History Museum, London - [2]
Research Collection of Jari Junnilainen - [1]
Research Collection of Kai Berggren - [2]
Research Collection of L. Deventer - [1]
Research Collection of Theo Gruenewald - [4]
Research Collection of Wolfgang Stark - [2]
SNSB, Zoologische Staatssammlung Muenchen - [6]
Senckenberg Natural History Collections Dresden, Museum of Zoology - [1]
Smithsonian Institution, National Museum of Natural History - [2]
Tiroler Landesmuseum Ferdinandeum - [9]
University of Oslo, Natural History Museum - [1]
University of Oulu - [1]
University of Oulu, Zoological Museum - [8]
Zoologisches Forschungsmuseum Alexander Koenig - [2]
Sequencing Centers:
Canadian Centre for DNA Barcoding - [2] Centre for Biodiversity Genomics - [54] Naturalis Biodiversity Center - [1]
Photography:
Aina Maerk Aspaas - [1] CBG Photography Group - [3] G. Rotheneder - [2] Hymenoptera Photo Group - [1] Jaclyn McCormick - [4] Jari Junnilainen - [1] Jay Cossey - [1] Kai Berggren - [3] Lisa Bartels - [11] Louis van Deventer - [1] M.J. Sterling - [1] Marko Mutanen - [1] Megan Swan - [2] Vazrick Nazari - [5] ZSM Hymenoptera Photography Group - [2] ZSM Photography Team - [3]
Collectors:
Alain Charpentier - [16] Buchner P. - [1] C. - [1] Carl Fredrik - [1] Ch. - [1] Colin Plant - [1] Dr. Andreas H. Segerer - [5] Dr. Theo Gruenewald - [4] E.Jackh - [2] Erlebach S. - [1] GBOL-Team SNSD - [1] Holzschuh - [1] Huemer P. - [5] Huemer P. & Tarmann G. M. - [2] J. Nel - [1] Jari Junnilainen - [1] Kai Berggren - [3] L. Kaila - [1] L.J. van Deventer - [1] Lauri Kaila - [1] Luehr - [1] Marko Mutanen - [6] Panu Vaelimaeki - [5] Rein-Arne Golf - [1] Rudi Tannert - [1] Rulik et al - [2] Tomi Mutanen - [1] Wieser - [1] lgt. W.Stark - [2]
Specimen Identification:
Andreas Segerer - [10] BOLD Identification System [] - [2] Christian Wieser - [2] E. Jackh - [1] E.J. Van Nieukerken - [1] F. Graf - [1] Jari Junnilainen - [1] Jean-Francois Landry - [16] Kai Berggren - [4] Mark J Sterling - [1] Marko Mutanen - [9] Peter Buchner - [1] Peter Huemer - [8] Sangmi Lee - [1] USNM Curators - [1] Wolfgang Stark - [2]