The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Landi, Monica; Dimech, Mark; Arculeo, Marco; Biondo, Girolama; Martins, Rogelia; Carneiro, Miguel; Carvalho, Gary Robert; Brutto, Sabrina Lo; Costa, Filipe O. DNA Barcoding for Species Assignment: The Case of Mediterranean Marine Fishes. PLoS ONE 2014-09-16;9(9):e106135 (PDF)
Emre Keskin and Hasan H. Atar DNA Barcoding Commercially Important Fish Species of Turkey Molecular Ecology Resources 2013-05-14;13(5):788-797 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Portugal - [3]
Namibia - [1]
Turkey - [22]
United Kingdom - [2]
Israel - [1]
Tunisia - [6]
Ghana - [1]
Ivory Coast - [2]
Cabo Verde - [2]
Morocco - [3]
Senegal - [4]
Nigeria - [1]
Mauritania - [4]
Benin - [2]
Liberia - [2]
Spain - [10]
DATA MANAGERS:
Public Data:
Private Data:
Charles S Walker - [7] Monica Landi - [1] Emre Keskin - [21] Frederick Hermanus Van der Bank - [1] Buki Rinkevich IOLR - [1] Adriana S. Luz - [1]
Sara M Francisco - [3] Amy C. Driskell - [2] Jean-Dominique Durand - [8] Kenza Mokhtar jamai - [7] Alexander Knorrn - [3] Evandro Lopes - [2] Alejandro L de Carlos - [10]
Institut National de Recherche Halieutique, Maroc - [7]
Institut Superieur des Sciences de la Mer, Mauritania - [1]
Institut de Recherche pour le Development, Senegal - [3]
Institut de Recherche pour le Developpement, France - [3]
Instituto Superior de Engenharias e Ciencias do Mar - [2]
Instituto Universitario de Ciencias Psicologicas, Sociais e da Vida - [3]
Instituto de Investigacao das Pescas e do Mar - [1]
Kwara State University, Malete - [1]
Mined from GenBank, NCBI - [7]
Senckenberg Research Institute and Natural History Museum - [3]
Smithsonian Institution, National Museum of Natural History - [2]
Tel Aviv University - [1]
University of California, Berkeley, Museum of Vertebrate Zoology, Evolutionary Genetics Lab - [1]
University of Johannesburg - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [1] Israel Oceanographic and Limnological Research - [1] Macrogen, Europe - [2] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [2] Universidade de Vigo - [10] Universidade do Minho - [1]
Photography:
H van der Bank - [2] INRH - [1] INRH, Marocco - [2] Institut National de Recherche Halieutique, Maroc - [4] Jean-Dominique Durand - [4] KOUAME N'GUESSAN EMMANUEL - [1] Nene Galle Kide - [1] Rafael Banon - [10] Segun Olayinka Oladipo - [1] Stern N. - [1]
Collectors:
Abdelmajid Dridi - [1] Adriana Luz - [1] Beatrice Gourene - [1] Corrine Almeida - [2] Dia Mamadou & Niang Alione - [3] Emre Keskin - [21] Frid - [1] IPIMAR - [1] Jean-Dominique Durand - [1] KOUAME N'GUESSAN EMMANUEL - [1] Mamadou Diop - [1] Najib Charouki - [4] Nene Galle Kide - [1] O. - [1] Rafael Banon - [10] Ross Robertson - [2] S Voges - [1] Said Hanoune/ Hakim Baazizi - [2] Saliou Faye - [1] Segun Olayinka Oladipo - [1]
Specimen Identification:
Adriana S. Luz - [1] Alexander Knorrn - [3] Beatrice A Adepo gourene - [1] Corrine Almeida - [2] David ross Robertson - [2] Emre Keskin - [21] J. Gamatham - [1] Jean-Dominique Durand - [4] Kenza Mokhtar jamai - [5] Kouame Nguessan Emmanuel - [1] Nene galle Kide - [1] Nir Stern - [1] Rafael Banon - [10] Rogelia Martins - [1] Segun O Oladipo - [1]