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The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Dirk Steinke, Allan D. Connell, Paul D.N. Hebert Linking adults and immatures of South African marine fishes Genome 2016-04-20;59(11):959-967
Landi, Monica; Dimech, Mark; Arculeo, Marco; Biondo, Girolama; Martins, Rogelia; Carneiro, Miguel; Carvalho, Gary Robert; Brutto, Sabrina Lo; Costa, Filipe O. DNA Barcoding for Species Assignment: The Case of Mediterranean Marine Fishes. PLoS ONE 2014-09-16;9(9):e106135 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Malta - [2]
South Africa - [2]
Indonesia - [1]
Israel - [5]
Turkey - [1]
Morocco - [3]
Unrecoverable - [2]
DATA MANAGERS:
Public Data:
Private Data:
Charles S Walker - [2] Dirk Steinke - [2] Sharon A. Appleyard - [1] Buki Rinkevich IOLR - [5] Filipe Costa - [2]
Capture Fisheries Section, Ministry for Resources and Rural Affairs, Malta - [2]
Institut National de Recherche Halieutique, Maroc - [3]
Middle East Technical University, Institute of Marine Sciences - [1]
Mined from GenBank, NCBI - [2]
Research Collection of Allan Connell - [1]
South African Institute for Aquatic Biodiversity - [1]
Tel Aviv University - [1]
Tel Aviv University, The Steinhardt Museum of Natural History - [4]
Sequencing Centers:
CSIRO, Australian National Fish Collection - [1] Centre for Biodiversity Genomics - [4] Israel Oceanographic and Limnological Research - [1] Macrogen, Korea - [1]
Photography:
Esin Gulce SEZA, Sila AYGUN, Caner AKTAS - [1] INRH - [1] Institut National de Recherche Halieutique, Maroc - [2] Paz G. - [13]
Collectors:
Abdelmajid Dridi - [1] Allan D. Connell - [1] Ayoub Baali - [2] K Sorensen - [1] Meltem OK - [1] N. - [1] Serdar SAKINAN - [1] St Anna - [2] Stern - [1] Stern Nir - [4] W White (CSIRO) - [1]
Specimen Identification:
Allan D. Connell - [1] Dirk Steinke - [1] Kenza Mokhtar jamai - [3] Mark Dimech - [2] Meltem Ok - [1] Nir Stern - [5] Peter Last - [1]