The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Jean-François Landry, Vazrick Nazari, Jeremy R. Dewaard, Marko Mutanen, Carlos Lopez-Vaamonde, Peter Huemer and Paul D.N. Hebert Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology Zootaxa 2013-12-16;3749(1):1-93 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [21]
Czech Republic - [3]
United Kingdom - [2]
Germany - [11]
Finland - [3]
France - [2]
United States - [8]
Austria - [3]
Norway - [2]
Russia - [3]
Spain - [1]
China - [1]
DATA MANAGERS:
Public Data:
Private Data:
Peter Huemer - [4] Jason R Grant - [1] Paul D.N. Hebert - [1] Marko Mutanen - [3] Andreas Segerer - [11] Jeremy deWaard - [4] Carlos Lopez-Vaamonde - [6] Jean-Francois Landry - [10] CBG Project Management Team - [3] Arild Johnsen - [1] Rodolphe Rougerie - [1] Wolfgang Stark - [1] Torbjorn Ekrem - [1] Scott E. Miller - [1] Daniel Handfield - [1] Tengteng Liu - [1]
Jason R Grant - [5] Daniel Handfield - [3] Reza Zahiri - [1] Natalia Kirichenko - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LEFIE294-10 {Caloptilia populetorum}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Pacific Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [8]
Centre for Biodiversity Genomics - [6]
Institut National de la Recherche Agronomique, Zoologie Forestiere - [1]
NTNU University Museum, Department of Natural History - [1]
Natural History Museum, London - [1]
Research Collection of Alain Cama - [2]
Research Collection of Ales Lastuvka - [1]
Research Collection of Daniel Handfield - [5]
Research Collection of Ian Simms - [1]
Research Collection of Peter Buchner - [1]
Research Collection of Peter Lichtmannecker - [1]
Research Collection of Richard Heindel - [1]
Research Collection of Theo Gruenewald - [1]
Research Collection of Thomas Guggemoos - [1]
Research Collection of Wolfgang Stark - [1]
Research Collection of Zdenek Lastuvka - [2]
Royal British Columbia Museum - [1]
Russian Academy of Sciences, Zoological Institute - [1]
SNSB, Zoologische Staatssammlung Muenchen - [7]
Shandong Normal University - [1]
Smithsonian Institution, National Museum of Natural History - [1]
Tiroler Landesmuseum Ferdinandeum - [3]
University of Alaska Museum - [6]
University of Oslo, Natural History Museum - [1]
University of Oulu, Zoological Museum - [3]
Sequencing Centers:
Centre for Biodiversity Genomics - [55]
Photography:
CBG Photography Group - [7] Carlos Lopez Vaamonde - [1] Daniel Handfield - [3] David C. Lees - [2] Erik Bostrom - [1] G. Rotheneder - [1] Hymenoptera Photo Group - [1] Ian Simms - [1] Jaclyn McCormick - [3] Jason Grant - [6] Jay Cossey - [1] Jean-Francois Landry - [1] Jeremy deWaard - [2] Kai Berggren - [1] Kerstin Wehinger - [1] Natalia Kirichenko - [1] Peter Buchner - [1] Vazrick Nazari - [5] Xiaoping Geng - [1] ZSM Hymenoptera Photography Group - [4] ZSM Photography Team - [4] Zdenek Lastuvka - [3]
Collectors:
A. Lastuvka - [3] A.Baetz - [1] Alain Cama - [2] Alain Charpentier - [3] Carl Fredrik - [1] Carlos Lopez -Vaamonde - [1] D.Handfield - [1] Daniel Handfield - [3] Dave G. Holden - [1] Dr. Andreas H. Segerer - [7] Dr. Theo Gruenewald - [1] G.M. Abdurakhmanov - [1] Handfield D. - [3] Holden D. - [1] Huemer P. - [1] Huemer P. & Wiesmair B. - [2] Ian Sims - [1] J. Vargo - [1] J.-F. Landry - [1] J.F. Landry - [1] J.R. - [2] Jason Grant - [6] Jean-Francois Landry - [2] Kai Berggren - [1] Luhr - [1] Marko Mutanen - [3] Michael McGinnis - [1] Pete - [1] Peter Lichtmannecker - [1] Pinette - [1] R Barfoot - [1] R.C.Beckwith - [1] Richard Heindel - [1] Sejal - [1] Stark W. - [1] Tengteng Liu - [1] Thomas Guggemoos - [1] deWaard - [2] lgt. W.Stark - [1]
Specimen Identification:
A. Lastuvka - [3] Alain Cama - [2] Alain Charpentier - [2] Andreas Segerer - [11] Carlos Lopez-Vaamonde - [1] D. R. Davis - [1] Daniel Handfield - [4] Encui Wang - [1] Gergin A. Blagoev - [1] Ian Simms - [1] Jason R Grant - [6] Jean-Francois Landry - [8] Kai Berggren - [2] Marko Mutanen - [3] Peter Huemer - [3] Reza Zahiri - [1] S. V. Baryshnikova - [1] W. Stark - [1] Wolfgang Stark - [1]