The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Paul D. N. Hebert, Jeremy R. deWaard, Evgeny V. Zakharov, Sean W. J. Prosser, Jayme E. Sones, Jaclyn T. A. McKeown, Beth Mantle and John La Salle A DNA ‘Barcode Blitz’: Rapid Digitization and Sequencing of a Natural History Collection PLoS ONE 2013-05-27;8(7):e68535 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [5]
Australia - [14]
United States - [13]
United Kingdom - [6]
Spain - [4]
Austria - [3]
Germany - [1]
France - [6]
French Polynesia - [1]
South Africa - [2]
Italy - [5]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [8] Jean-Francois Landry - [5] Paul D.N. Hebert - [9] Akito Y. Kawahara - [1] Carlos Lopez-Vaamonde - [2] Peter Huemer - [5] Andrew Mitchell - [3] Isabelle P. Meusnier - [3] Chris Looney - [2] Axel Hausmann - [1] Per Falck - [1] Scott E. Miller - [5] Wolfgang Stark - [1]
CBG Collections Unit - [3] Carlos Lopez-Vaamonde - [3] Stefano Scalercio - [1] Lyndall Pereira da Conceicoa - [1] Peter Huemer - [2] Wolfgang Stark - [1] David Porco - [2] Mark I. Stevens - [1]
Center for Biology and Management of Populations, Montpellier - [3]
Centre for Biodiversity Genomics - [16]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [1]
Hills and Fleurieu Landscape Board - [1]
Institut National de la Recherche Agronomique, Zoologie Forestiere - [3]
Institut de Recherche sur la Biologie de l'Insecte - [1]
Landessammlungen Niederosterreich - [1]
Museum National d'Histoire Naturelle de Paris, Provisional Research Collection - [2]
Natural History Museum, London - [2]
Research Collection of Carlos Lopez-Vaamonde - [1]
Research Collection of David Holden - [5]
Research Collection of P. Falck - [1]
Research Collection of Peter Buchner - [1]
Research Collection of Wolfgang Stark - [1]
Smithsonian Institution, National Museum of Natural History - [5]
Tiroler Landesmuseum Ferdinandeum - [6]
University of Maryland - [1]
Washington State Department of Agriculture - [2]
Wellcome Sanger Institute - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [42] Institut National de la Recherche Agronomique, Paris - [3]
Photography:
Annabelle Tiret - [1] CBG Photography Group - [9] CBG Robotic Imager - [3] Deharveng & Bedos - [2] Elisabeth Frank - [2] G. Rotheneder - [2] Giuseppe Rijllo - [1] Ian Sims - [3] Jaclyn McCormick - [3] Jay Cossey - [1] Jean-Francois Landry - [5] Per Falck - [1] Peter Buchner - [1] Richard Wilson - [4] Sanger BIOSCAN Team - [1] Sarah Young - [3] Spencer Walker - [2] Tiara Yasmeen Hensel - [1]
Collectors:
A.D. Hegedus - [3] B. Akerbergs - [2] Billy Prince - [1] Bob Ward - [1] Carlos Lopez Vaamonde - [1] Carole Husson - [3] Charles Mitter - [1] Christy Carr - [1] D Holden - [5] D.R. Britton - [3] D.R. Davis - [2] David Andrew Grundy - [1] Deharveng & Bedos - [2] E.Holm - [1] GAC 0144 - [1] Grant Loescher - [1] H.Geier - [1] Huemer P. - [6] Ian Simms - [3] J Edwards - [1] J.M.Swearingen - [1] J.McCormick - [1] J.Sones - [1] J.Webb - [1] JFG Clarke & TM Clarke - [1] Jaclyn McCormick - [1] Jayme Sones - [1] Joshua Kohn - [1] M.M. Davis - [2] Mark Stevens - [2] Matthew Ellis - [1] Milo Sumner - [1] Mindy ALLEN - [1] N.Bloomfield - [2] NHMLAC - [1] O. Rist - [1] P. Hebert - [3] P.Hebert - [1] Paul Hebert - [1] Per Falck - [1] R.Labbee - [1] RAB 012 - [1] Richard Wilson - [4] S. Scalercio - [1] Stephanie Kirk - [1] Tanner Rebecca - [1] V. Gayk - [1] V.Levesque-Beaudin - [1] W.E.Steiner - [1] lgt. W.Stark - [2]
Specimen Identification:
ANIC Curators - [2] Akito Y. Kawahara - [1] Axel Hausmann - [1] BOLD ID Engine - [2] BOLD Identification System [2020] - [1] BOLD Identification System [] - [2] BOLD Machine Learning Tool Kit - [1] Carlos Lopez-Vaamonde - [1] David Grundy - [1] Dick Wilson - [1] Don R. Davis - [4] Eric H Lagasa - [2] Fabien Fohrer - [3] Ian Simms - [3] Jean-Francois Landry - [5] John Frederick Gates Clarke - [1] Louis Deharveng - [2] O. Rist - [1] Per Falck - [1] Peter Huemer - [6] Richard L. Wilson - [2] Wolfgang Stark - [2]