The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Muhammad Ashfaq, Saleem Akhtar, Muhammad Athar Rafi, Shahid Mansoor, Paul D. N. Hebert Mapping global biodiversity connections with DNA barcodes: Lepidoptera of Pakistan PLoS ONE 2017-03-24;12(3):e0174749 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Kenya - [1]
Italy - [9]
Spain - [4]
Pakistan - [25]
Finland - [1]
Russia - [1]
Turkiye - [2]
Cyprus - [2]
Israel - [3]
United Arab Emirates - [2]
Austria - [4]
Germany - [1]
Portugal - [2]
India - [5]
Greece - [2]
France - [3]
Egypt - [1]
China - [2]
Lebanon - [1]
United States Virgin Islands - [1]
Ghana - [1]
DATA MANAGERS:
Public Data:
Private Data:
Antonio S. Ortiz - [3] Marko Mutanen - [3] Scott E. Miller - [1] Beth Clare - [3] CBG Project Management Team - [3] Muhammad Ashfaq - [6] Peter Huemer - [8] Axel Hausmann - [5] Wolfgang Stark - [1] Charles S Walker - [11] Sonia AF Ferreira - [2] Shashank R. Pathour - [5] Nida Ali - [1] CBG Collections Unit - [4] Rodolphe Rougerie - [2]
Stefano Scalercio - [4] CBG Collections Unit - [14] Erik J. van Nieukerken - [2] Tengteng Liu - [2] Scott E. Miller - [1] Peter Huemer - [1]
Balochistan University of Information Technology, Engineering and Management Sciences - [1]
Bavarian State Collection of Zoology - [4]
Centre for Biodiversity Genomics - [23]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [4]
Indian Agricultural Research Institute, National Pusa Collection - [5]
Landesmuseum Kaernten - [2]
Mined from GenBank, NCBI - [11]
Museum national d'Histoire naturelle - [2]
National Institute for Biotechnology and Genetic Engineering - [6]
Naturalis Biodiversity Center - [2]
Research Center in Biodiversity and Genetic Resources - [2]
Research Collection of Feza Can Cengiz - [1]
Research Collection of Raimund Franz - [1]
Research Collection of Talya D. Hackett - [1]
Shandong Normal University - [2]
Smithsonian Institution, National Museum of Natural History - [2]
Tiroler Landesmuseum Ferdinandeum - [7]
Universidad de Murcia, Research Collection Biologia Animal - [3]
University of Oulu, Zoological Museum - [3]
Sequencing Centers:
Balochistan University of Information Technology, Engineering and Management Sciences - [1] Centre for Biodiversity Genomics - [32] Indian Agricultural Research Institute, National Pusa Collection - [5] Naturalis Biodiversity Center - [2]
Photography:
CBG Photography Group - [2] CBG Robotic Rig - [16] Christian Wieser - [1] Dr. Antonio S. Ortiz - [3] Elisabeth Frank - [1] Elizabeth Clare - [1] Feza Can Cengiz - [1] Giuseppe Rijllo - [4] Jérôme Barbut - [1] J. Mirza - [1] Julien Piolain - [1] Marko Mutanen - [1] Muhammad Ashfaq - [5] Naturalis DNA barcoding facility - [2] Nick Jeffery - [1] Nida Ali - [3] Peter Buchner - [1] Talitta Simoes - [1] ZSM Photography Team - [3] photo work group Dr. Axel Hausmann - [1]
Collectors:
A. Hausmann - [3] BAA - [1] C & FK Gielis - [2] C. Haber - [1] C. Saliba - [1] Ch. - [2] Dr. Ahktar Rasool - [1] Dr. Naeem Shahwani - [2] Dr. Shah Jahan - [1] E.L.Todd - [1] EYD - [1] Farkhanda Manzoor - [1] Feza Can Cengiz - [1] Franz R. - [1] Huemer P. - [6] J Mirza - [1] J.J. Guerrero - [2] J.L. Palacios - [1] Jari Junnilainen - [1] Jerome Barbut - [1] Julien Piolain - [1] Kari Nupponen - [2] M. Akhtar - [1] M. Bou Dagher Kharrat - [1] M. Makary - [1] M. Seizmair - [1] Malik Ghulam Sarwar - [3] Martin Corley - [2] Mr. Numan - [1] Muhammad Rafique - [1] Muhammad Tufail - [3] NAA - [1] Nazir Ahmed - [3] Riffat - [2] S. Akhtar - [5] S.E. Miller - [1] Samy Zalat - [1] Santosh - [2] Shashank PR - [5] Sonia Ferreira - [2] Stark W. - [1] TDH - [1] Talya D. Hackett - [3] Teemu Klemetti - [1] Wieser - [2] Xiaoping Geng - [2]
Specimen Identification:
Antonio S. Ortiz - [3] Axel Hausmann - [4] BOLD Identification System [2022] - [2] BOLD Identification System [2023] - [6] BOLD Machine Learning Tool Kit - [5] Christian Wieser - [2] Erik J. van Nieukerken - [2] Gergin A. Blagoev - [4] Gottfried Behounek - [1] Jerome Barbut - [2] Marko Mutanen - [3] Martin Corley - [2] Muhammad Ashfaq - [7] Peter Huemer - [6] Renee Miskie - [2] Shashank P R - [1] Shashank R. Pathour - [1] Twinkle Sinha - [3] Xiaoping Geng - [2]