The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [6]
United Kingdom - [2]
Austria - [6]
Finland - [11]
Germany - [4]
Italy - [11]
Denmark - [1]
Bulgaria - [2]
Norway - [5]
France - [1]
Liechtenstein - [1]
Sweden - [1]
DATA MANAGERS:
Public Data:
Private Data:
Peter Huemer - [18] Gergin A. Blagoev - [2] Marko Mutanen - [11] Daniel Handfield - [3] Torbjorn Ekrem - [2] Jean-Francois Landry - [2] Jeremy deWaard - [1] Paul D.N. Hebert - [1] Andreas Segerer - [4] Arild Johnsen - [3] Matthew P Besley - [1] Marten Klinth - [1]
Peter Huemer - [1] Marko Mutanen - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LEFIG504-10 {Aethes rutilana}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Pacific Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [2]
Landesmuseum Kaernten - [1]
NTNU University Museum, Department of Natural History - [2]
Natural History Museum, London - [2]
Research Collection of Daniel Handfield - [3]
Research Collection of Kai Berggren - [3]
Research Collection of Thierry Varenne - [1]
Research Collection of Toni Mayr - [1]
SNSB, Zoologische Staatssammlung Muenchen - [4]
Sofia University, St. Kliment Ohridski - [2]
Station Linne - [1]
Tiroler Landesmuseum Ferdinandeum - [15]
University of Oulu - [1]
University of Oulu, Zoological Museum - [11]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [48]
Photography:
Erik Bostrom - [2] Jaclyn McCormick - [3] Jay Cossey - [1] Kai Berggren - [3] Marko Mutanen - [5] Megan Swan - [3] Minna Orreveteläinen - [1] Peter Huemer - [1] S. Heim - [1] Vazrick Nazari - [2] Wieser Ch. - [1] ZSM Photography Team - [1]
Collectors:
Anttoni Mutanen - [2] Atsalea Mutanen - [1] B. Zlatkov - [2] Ch. - [1] D.Handfield - [3] Dr David C. Lees - [1] Dr. Andreas H. Segerer - [3] Ethel Aberg - [1] Gulbrandsen - [2] H. Hendriksen - [1] Hiermann U. - [1] Huemer P. - [16] J. - [2] J.-F. Landry - [2] Julian Bittermann - [1] Kai Berggren - [3] Marko Mutanen - [11] Meelika Mutanen - [1] Nestori Mutanen - [3] O. Sivilov - [2] Panu Vaelimaeki - [3] R Duncan: D Manastyrski - [1] Sylvia Mutanen - [1] Varenne T. - [1] Wieser - [1]
Specimen Identification:
Andreas Segerer - [4] Boyan P. Zlatkov - [2] Christian Wieser - [1] Daniel Handfield - [3] David C. Lees - [1] Jean-Francois Landry - [2] Kai Berggren - [5] Marko Mutanen - [12] Marten Klinth - [1] Mayr A. - [1] Peter Huemer - [17] R. Duncan - [1]