The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Tyler S. Zemlak, Robert D. Ward, Allan D. Connell, Bronwyn H. Holmes and Paul D. N. Hebert DNA barcoding reveals overlooked marine fishes Molecular Ecology Resources 2009-04-21;9(01):237-242 (PDF)
Kenji Saitoh, Masaki Miya, Jun G. Inoue, Naoya B. Ishiguro and Mutsumi Nishida Mitochondrial genomics of ostariophysan fishes: perspectives on phylogeny and biogeography. Journal of Molecular Evolution 2003-04-01;56(4):464-472 (PDF)
Hosseinali Asgharian, Homayoun Hosseinzadeh Sahafi, Aria Ashja Ardalan, Shahrokh Shekarriz and Elahe Elahi Cytochrome c oxidase subunit 1 barcode data of fish of the Nayband National Park in the Persian Gulf and analysis using meta-data flag several cryptic species. Molecular Ecology Resources 2011-05-01;11(3):461-472 (PDF)
Sean V. L. Aquilino, Jazzlyn M. Tango, Ian K. C. Fontanilla, Roberto C. Pagulayan, Zubaida U. Basiao, Perry S. Ong and Jonas P. Quilang DNA barcoding of the ichthyofauna of Taal Lake, Philippines. Molecular Ecology Resources 2011-07-01;11(4):612-619 (PDF)
HADI DAHRUDDIN, ADITYA HUTAMA, FREDERIC BUSSON, SOPIAN SAURI,
ROBERT HANNER, PHILIPPE KEITH, RENNY HADIATY and NICOLAS HUBERT Revisiting the ichthyodiversity of Java and Bali through DNA barcodes: taxonomic coverage, identification accuracy, cryptic diversity and identification of exotic species Molecular Ecology Resources 2016-04-29;17(2):288-299
Dirk Steinke, Allan D. Connell, Paul D.N. Hebert Linking adults and immatures of South African marine fishes Genome 2016-04-20;59(11):959-967
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
South Africa - [4]
Australia - [3]
Taiwan - [1]
French Polynesia - [3]
Indonesia - [14]
Iran - [1]
United States - [46]
Philippines - [19]
Mexico - [13]
China - [6]
India - [121]
Mayotte - [2]
United Kingdom - [2]
Vietnam - [12]
Bangladesh - [1]
Pakistan - [2]
Malaysia - [2]
Reunion - [2]
Unrecoverable - [70]
Tanzania - [1]
Saudi Arabia - [1]
DATA MANAGERS:
Public Data:
Private Data:
Sharon A. Appleyard - [6] Dirk Steinke - [3] Christopher Meyer - [2] Andrew C. Bentley - [1] Hosseinali Asgharian - [1] Charles S Walker - [227] Jonas P. Quilang - [5] Benjamin Victor - [1] Junbin Zhang - [3] Salvador Lluch-Cota - [6] Diane E. Pitassy - [3] Chiahao Chang - [5] Nicolas Hubert - [3] Snehal Bagatharia - [1] Gulab D. Khedkar - [3] Rosalee S Hellberg - [34]
Marion I Mennesson - [2] Arif Muhammad Khan - [2] Nicolas Hubert - [6] Jade Tiffany S Rey - [6] Noorhani SYAHIDA Kasim - [1] Siti Zafirah Ghazali - [1] Cretus Mtonga - [1] Charles S Walker - [2] Patrice Pruvost - [2] Martha Valdez-Moreno - [4] Claudia alicia CASS Silva segundo - [2] Gulab D. Khedkar - [1] FBRC ZSI - [1] Jonathan R. Deeds - [12]
Academia Sinica, Biodiversity Research Museum - [5]
CSIRO, Australian National Fish Collection - [2]
Centre for Biodiversity Genomics - [2]
Centro de Investigaciones Biologicas del Noroeste S. C. - [6]
Chinese Academy of Sciences, Marine Biodiversity Collection of South China Sea - [3]
El Colegio de la Frontera Sur, Unidad Chetumal - [4]
Gujarat Biodiversity Gene Bank - [1]
Indonesian Institute of Sciences, Research Centre for Biology - [9]
Instituto Politecnico Nacional, Centro Interdisciplinario de Ciencias Marinas - [2]
Mined from GenBank, NCBI - [228]
Museum National d'Histoire Naturelle de Paris - [2]
Museum national d'Histoire naturelle - [4]
National Fisheries Research and Development Institute - [6]
Nelson Mandela African Institution of Science and Technology (NM-AIST) - [1]
Paul Hebert Centre for DNA Barcoding and Biodiversity Studies - [4]
Research Collection of Allan Connell - [2]
Research Collection of Benjamin Victor - [1]
Smithsonian Institution, National Museum of Natural History - [3]
South African Institute for Aquatic Biodiversity - [2]
South China Sea Repository and Reference Centre (RRC), Universiti Malaysia Terengganu - [2]
U. S. Food and Drug Administration, Center for Food Safety and Applied Nutrition - [12]
U.S. Food and Drug Administration, Office of Regulatory Affairs, Pacific Regional Laboratory Northwest - [34]
University of Kansas, Biodiversity Research Center - [1]
University of Sargodha - [2]
University of Tehran - [1]
University of the Philippines Diliman, Institute of Biology - [5]
Zoological Survey of India, Freshwater Biology Regional Centre - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [26] Chapman University - [34] Gujarat Biodiversity Gene Bank - [1] Leibniz Centre for Tropical Marine Research - [1] Macrogen, Korea - [1] Paul Hebert Centre for DNA Barcoding and Biodiversity Studies - [2] Smithsonian Institution - [2] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [3] Universidad Nacional Autonoma de Mexico, Instituto de Biologia - [5] Universiti Malaysia Terengganu - [2]
Photography:
Allan D. Connell - [2] Claudia Alicia Silva Segundo - [3] Cretus - [2] D. Ponton - IRD - [2] Jeffrey T. Williams - [3] Jose Angel Cohuo Colli - [4] Mahesh R. Shingare - [1] Miguel Tripp Valdez - [5] Mohsan Raza - [2] Nicolas HUBERT - [7] Nicolas Hubert - [2] ganesh korhale and amol kalyankar - [1]
Collectors:
A Sholilah - [4] AMOL AND GAGESH - [2] Aditya Hutama - [3] Alif - [2] Allan Connell - [1] Allan D. Connell - [2] Apollo Lizano - [2] Bearez - [2] Benjamin Victor - [1] C.A. Silva-Segundo - [1] Cretus - [1] Debora - [1] Dr. Boni Amin Laskar and Harikumar Adimalla - [1] E Delrieu-Trottin - [1] E Dounias - [1] F Busson - [5] Francisco Lopez Rasgado - [6] G Yearsley - [2] H Dahruddin - [4] Hanif - [2] Hosseinali Asgharian - [1] I Utama - [2] Jacqueline Marjorie Pereda - [6] Jazzlyn Tango - [5] Jeffrey T. Williams - [3] Jonas Quilang - [5] Jose Angel Cohuo Colli - [4] Junbin Zhang - [6] Kent Carpenter - [3] Lukio - [1] Mahesh R. Shingare - [1] Melody Puckridge - [1] Michael Mendiola - [2] Mohsan raza - [2] Mou-Tham et Pruvost - [2] N Hubert - [6] Nicolas Hubert - [3] Nurjirana - [1] Ocea Consult - [2] P Last (CSIRO) - [2] Ponton - [2] R. Funes-Rodriguez - [1] R. Gonzalez-Armas - [1] R. Thirumaraiselvi - [1] Rene Galzin - [2] Renny Hadiaty - [3] Rose Tiffany Pol - [6] S Sauri - [2] S. Weerts - [1] Sean Vincent Aquilino - [5] Sopian Sauri - [3] Sumanta - [3] T Sukmono - [4] U Nurhaman - [4] Vikas Kalyankar - [1] subburaman - [1]
Specimen Identification:
Allan D. Connell - [2] Benjamin Victor - [1] Claudia alicia CASS Silva segundo - [2] Cretus Mtonga - [1] Dirk Steinke - [2] FBRC ZSI - [1] Francisco Lopez Rasgado - [6] Gulab D. Khedkar - [2] Jacqueline Marjorie R. Pereda - [6] Jeff Williams - [5] Jonas P. Quilang - [5] Junbin Zhang - [3] Mahesh R. Shingare - [1] Martha Valdez-Moreno - [4] Mohsan Raza - [2] Nicolas Hubert - [9] Noorhani SYAHIDA Kasim - [2] P. L. Lin - [5] Philippe Bearez - [2] S. Subburaman - [1] Sandeep R. Rathod - [1] William White - [1]