The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert, Jeremy R. deWaard, Evgeny V. Zakharov, Sean W. J. Prosser, Jayme E. Sones, Jaclyn T. A. McKeown, Beth Mantle and John La Salle A DNA ‘Barcode Blitz’: Rapid Digitization and Sequencing of a Natural History Collection PLoS ONE 2013-05-27;8(7):e68535 (PDF)
Miller, Scott E.; Martins, Dino J.; Rosati, Margaret; Hebert, Paul D.N. DNA barcodes of moths (Lepidoptera) from Lake Turkana, Kenya Proceedings of the Entomological Society of Washington 2014-01-30;116(1):133-136 (PDF)
Carlos Lopez-Vaamonde, Lucas Sire, Bruno Rasmussen, Rodolphe Rougerie, Christian Wieser, Allaoui Ahamadi Allaoui, Joël Minet, Jeremy R. deWaard, Thibaud Decaëns, David C. Leesh DNA barcodes reveal deeply neglected diversity and numerous invasions of micromoths in Madagascar Genome 2018-09-05
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Nigeria - [10]
United States - [4]
Mexico - [2]
Australia - [1]
Kenya - [2]
Papua New Guinea - [2]
Sierra Leone - [1]
South Africa - [4]
Palau - [1]
Costa Rica - [2]
India - [1]
Madagascar - [1]
French Polynesia - [2]
Angola - [1]
Reunion - [2]
Ghana - [9]
Chad - [1]
Ecuador - [18]
Mozambique - [2]
Pakistan - [1]
DATA MANAGERS:
Public Data:
Private Data:
Paul D.N. Hebert - [1] Zhaofu Yang - [1] Charles S Walker - [1] Virash K. Gupta - [1] Rodolphe Rougerie - [1] CBG Project Management Team - [6] Scott E. Miller - [15] Carmen Pozo de la Tijera - [2] Matthias Nuss - [1] Axel Hausmann - [1] Suresh Naik - [2] CBG Collections Unit - [4]
Samuel Nibouche - [3] Manuela MB Bartel - [1] Andrea Pinos - [1] CBG Collections Unit - [26]
Canadian National Collection of Insects, Arachnids and Nematodes - [1]
Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement, La Reunion - [3]
Centre for Biodiversity Genomics - [36]
El Colegio de la Frontera Sur - [2]
Landesmuseum Kaernten - [1]
Mined from GenBank, NCBI - [1]
Punjab Agricultural University, Insect Museum - [1]
Research Collection of Timm Karisch - [1]
SNSB, Zoologische Staatssammlung Muenchen - [1]
Senckenberg Natural History Collections Dresden, Museum of Zoology - [1]
Smithsonian Institution, National Museum of Natural History - [15]
University of Pennsylvania - [2]
University of Wurzburg - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [28]
Photography:
CBG Photography Group - [4] CBG Robotic Imager - [5] CBG Robotic Rig - [25] Christian Wieser - [1] Daniel H. Janzen - [2] Frauke Nielsen - [1] Jaclyn McCormick - [1] Thomas Schmitzer - [1] Zhaofu Yang - [1] photo work group Dr. Axel Hausmann - [1]
Collectors:
A. Hausmann - [1] BAA - [9] Bharti Mohindru - [1] Christian Wieser - [1] Danny Govender - [1] E.D.Edwards - [1] EYD - [9] Emigdio May - [1] GM Miller & TM Kuklenski - [3] Geetika Banta - [1] J. deWaard - [4] J.F. Landry - [3] JFG Clarke & TM Clarke - [2] K. Pickthorn - [3] Lucy - [1] Lufund Chantal Muthelu - [1] M. Akhtar - [1] M. Nuss - [1] M.Hutchinson - [2] NAA - [9] P. Hebert - [1] P.D.N. Hebert - [3] R.Pringle - [2] SE Miller & DJ Martins - [1] SE Miller & TM Kuklenski - [7] Sachin Sharma - [1] Sandra Garces-Carrera - [18] Spencer Kemp - [1] T. Karisch - [1] TDH - [9] Thomas - [1] Tijl Essens - [1] VO Becker - [2] Vikas Jindal - [1] Virash gupta - [1]
Specimen Identification:
ANIC Curators - [1] BOLD Identification System [2019] - [2] BOLD Identification System [2022] - [2] BOLD Identification System [2023] - [18] CBG Taxonomy Unit - [2] Daniel H. Janzen - [2] David Lees - [1] Eugene G. Munroe - [1] Henri-Pierre Aberlenc - [1] John Frederick Gates Clarke - [2] Michael Wiesneth - [1] Paul D.N. Hebert - [8] Samuel Nibouche - [2] Scott E. Miller - [13] Vikas Jindal - [1]