The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Paul D. N. Hebert, Marko Mutanen, Christian Wieser, Benjamin Wiesmair, Axel Hausmann, Roman Yakovlev, Markus Möst, Brigitte Gottsberger, Patrick Strutzenberger, Konrad Fiedler Large geographic distance versus small DNA barcode divergence: Insights from a comparison of European to South Siberian Lepidoptera PLoS ONE 2018-06-08;13(11):0-0
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [46]
Norway - [24]
United Kingdom - [1]
Germany - [6]
Finland - [15]
Austria - [4]
United States - [1]
Italy - [1]
Russia - [4]
Denmark - [1]
France - [1]
Sweden - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [15] CBG Collections Unit - [15] Marko Mutanen - [13] Arild Johnsen - [16] Torbjorn Ekrem - [5] Jeremy deWaard - [13] Andreas Segerer - [5] Peter Huemer - [8] Chris Looney - [2] Axel Hausmann - [1] Wolfgang Stark - [1] Jean-Francois Landry - [2] Paul D.N. Hebert - [1] Carlos Lopez-Vaamonde - [1] Marten Klinth - [1]
Stig Lundmo - [3] Marko Mutanen - [3]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
MECD219-06 {Epinotia trigonella}
License:
Copyright (2007)
License Holder:
Jean-Francois Landry, Canadian National Collection
Canadian Forest Service, Pacific Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [6]
Centre for Biodiversity Genomics - [28]
Helgeland Museum, Natural History Department - [3]
NTNU University Museum, Department of Natural History - [5]
Natural History Museum, London - [1]
Research Collection of Alfred Haslberger - [1]
Research Collection of Carlos Lopez Vaamonde - [1]
Research Collection of Daniel Handfield - [7]
Research Collection of Kai Berggren - [11]
Research Collection of Rudolf Tannert - [1]
Research Collection of Theo Gruenewald - [1]
Research Collection of Wolfgang Stark - [1]
Royal British Columbia Museum - [2]
SNSB, Zoologische Staatssammlung Muenchen - [3]
Station Linne - [1]
Tiroler Landesmuseum Ferdinandeum - [8]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [1]
University of Oslo, Natural History Museum - [5]
University of Oulu, Zoological Museum - [15]
University of Turku - [1]
Washington State Department of Agriculture - [2]
Sequencing Centers:
Centre for Biodiversity Genomics - [78] Unknown - [3]
Photography:
CBG Photography Group - [18] CBG Robotic Rig - [4] Erik Bostrom - [5] G. Rotheneder - [1] Hymenoptera Photo Group - [1] Jaclyn McCormick - [7] Jay Cossey - [1] Jean-Francois Landry - [2] Jeremy deWaard - [4] Jules Dessart-Pardon - [1] Kai Berggren - [11] Lauren Van Patter - [1] Marko Mutanen - [2] Mikhail Kozlov - [1] Minna Orreveteläinen - [5] ZSM Hymenoptera Photography Group - [1] ZSM Photography Team - [2]
Collectors:
A.W.Thomas - [2] Alfred Haslberger - [1] Andreas Werno - [1] Anttoni Mutanen - [3] Atle Ivar Olsen - [1] B. Naday - [2] BIOBus 2012 - [1] Berggren - [8] C.McKinnon - [1] Carl Fredrik - [5] Carlos Lopez Vaamonde - [1] Clayton Syfchuk - [1] Craig M - [1] Dania M. - [1] Daniel Handfield - [7] David Holden - [1] Deutsch H. - [1] Dr. Alexander Miehr - [1] Dr. Theo Gruenewald - [1] Erlebach S. - [1] Ethel Aberg - [1] Evan Perry - [1] Forest Insect Survey - [1] Franz Theimer - [1] G Miliczky - [1] Heather Denine - [1] Huemer P. - [2] Huemer P. & Wiesmair B. - [4] J. Reimer - [1] J.Brewster - [1] J.F.Landry - [1] J.R. - [4] K. McCabe - [1] Kai - [8] Kai Berggren - [8] L. Grevstad - [2] L. Janke - [1] L. Scott - [2] Luehr - [5] M. Oprandi - [2] M.Leung - [7] M.Trotter - [2] Marko Mutanen - [15] Mikhail Kozlov - [1] Monica J - [1] Nestori Mutanen - [3] P.D.N. Hebert - [5] Panu Vaelimaeki - [8] Petter Hamnes - [1] Rein-Arne Golf - [6] Rudolf Tannert - [1] S.Devita - [1] Stig Lundmo - [1] T.Davison - [1] Tyler Zemlak - [1] Vitali Zverev - [1] deWaard - [4] lgt. W.Stark - [1]
Specimen Identification:
Andreas Segerer - [6] BOLD Identification System [2022] - [1] BOLD Identification System [] - [5] BOLD Machine Learning Tool Kit - [1] Daniel Handfield - [7] Eric H Lagasa - [2] Jean-Francois Landry - [2] Jeremy deWaard - [12] Kai Berggren - [21] Katy R. Hind - [4] Lotta AMELIE Moerch - [1] Marko Mutanen - [15] Marten Klinth - [1] Peter Huemer - [8] Stig Lundmo - [3] Tony Thomas - [2] Wolfgang Stark - [1]