The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Mikko Pentinsaari, Gergin A. Blagoev, Ian D. Hogg, Valerie Levesque-Beaudin, Kate Perez, Crystal N. Sobel, Bryan Vandenbrink, Alex Borisenko A DNA Barcoding Survey of an Arctic Arthropod Community: Implications for Future Monitoring Insects 2020-01-09;11(46):1-18 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Peter Huemer, Paul D. N. Hebert, Marko Mutanen, Christian Wieser, Benjamin Wiesmair, Axel Hausmann, Roman Yakovlev, Markus Möst, Brigitte Gottsberger, Patrick Strutzenberger, Konrad Fiedler Large geographic distance versus small DNA barcode divergence: Insights from a comparison of European to South Siberian Lepidoptera PLoS ONE 2018-06-08;13(11):0-0
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [188]
Norway - [3]
Finland - [15]
Austria - [1]
Russia - [3]
Italy - [1]
Sweden - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jean-Francois Landry - [24] CBG Collections Unit - [31] CBG Project Management Team - [76] Helena K. Wirta - [1] Gregory R. Pohl - [25] Daniel Handfield - [8] Evgeny V. Zakharov - [1] Jeremy deWaard - [9] Chris Looney - [1] Sarah Adamowicz - [9] Marko Mutanen - [15] Peter Huemer - [5] Arild Johnsen - [2] Torbjorn Ekrem - [1] Marten Klinth - [1]
CBG Collections Unit - [1] Daniel Handfield - [2]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LEFID439-10 {Gypsonoma nitidulana}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Northern Forestry Centre - [21]
Canadian High Arctic Research Station - [3]
Canadian National Collection of Insects, Arachnids and Nematodes - [23]
Centre for Biodiversity Genomics - [111]
Landesmuseum Kaernten - [3]
NTNU University Museum, Department of Natural History - [1]
Research Collection of Daniel Handfield - [15]
Research Collection of G. Pohl - [5]
Research Collection of Jeremy deWaard - [3]
Research Collection of L. Jolicoeur - [4]
Station Linne - [1]
Tiroler Landesmuseum Ferdinandeum - [2]
University of Guelph - [1]
University of Helsinki - [1]
University of Oslo, Natural History Museum - [2]
University of Oulu, Zoological Museum - [15]
Washington State Department of Agriculture - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [178] Unknown - [1]
Photography:
Brandon Laforest - [1] CBG Photography Group - [30] CBG Robotic Imager - [14] CBG Robotic Rig - [4] Chad Whitmell - [1] Christian Wieser - [1] Daniel Handfield - [2] Deneka, A. J. - [25] Erik Bostrom - [1] Jaclyn McCormick - [11] Jean-Francois Landry - [22] Jenni Moilanen - [1] Jeremy deWaard - [3] Kristen Mancuso - [3] Lauren Van Patter - [3] Leif Aarvik - [1] Lisa Bartels - [2] Marko Mutanen - [5] Nick Jeffery - [1] Spencer Walker - [5] Trude Magnussen - [1] Wieser Ch. - [1]
Collectors:
A. W. Thomas - [8] A.Dobrescu - [2] Aarvik - [2] Anttoni Mutanen - [2] Arctic & Boreal Entomology - [5] B. Christensen - [1] B. Naday - [2] BIOBus 2012 - [1] BIObus 2008 - [7] BIObus 2009 - [1] BIObus 2010 - [6] BIObus 2013 - [3] BIObus 2014 - [1] Bryan Vandenbrink - [2] C. Lear - [4] C.Lear - [1] C.W.P. - [5] C.Wong - [2] CBG Collections Staff - [1] Carl Fredrik - [1] Cavan Harpur - [2] Ch. - [3] Crabo - [11] Craig M - [1] D.Crossland - [2] D.Handfield - [8] D.Whitaker - [1] Daniel Handfield - [5] Darroch Whitaker - [1] David Holden - [1] Deneka - [5] E. Imbeau - [4] E.Bolduc - [1] G.R. - [9] Gregory R. Pohl - [5] Handfield D. - [2] Huemer P. & Wiesmair B. - [2] Ian McDonald - [32] J. - [1] J. Mailoux - [2] J.Maksagak - [1] J.McGowan - [1] J.R. - [3] J.deWaard - [3] Jean-Francois Landry - [2] Jorgen Naalisvaara - [1] K. McCabe - [2] K.Cox - [1] K.Rowter - [2] L Jolicoeur - [18] L. - [11] L. Grevstad - [2] Leif - [2] Luehr - [1] Lynn Scott - [1] M. Mariq - [4] M. Oprandi - [2] M.A. Mariq - [4] M.Blyth - [2] M.Kuzmina - [1] M.Patenaude - [1] M.Trotter - [1] Marko Mutanen - [14] Mary Whitley - [1] Monica J - [1] N.Perry - [2] Nestori Mutanen - [2] P.D.N. Hebert - [8] POLAR staff - [2] Panu Vaelimaeki - [4] Parks Canada - [1] Paul Hebert - [2] Pohl - [9] Ryan Gregory - [1] S. Cannings - [1] S.Chisholm - [2] S.K. Monckton - [1] Tomi Mutanen - [1] Wieser - [3] Wood & Lafontaine - [2] deWaard - [3]
Specimen Identification:
Anthony W. Thomas - [7] BOLD Identification System [2016] - [1] BOLD Identification System [2017] - [1] BOLD Identification System [2019] - [1] BOLD Identification System [] - [44] Caitlin Vandermeer - [1] Christian Wieser - [3] Daniel Handfield - [15] Eric H Lagasa - [1] Evgeny V. Zakharov - [2] Gergin A. Blagoev - [3] Gregory R. Pohl - [24] Jayme E. Sones - [1] Jean-Francois Landry - [30] Jeremy deWaard - [22] Kai Berggren - [1] Leif Aarvik - [2] Marko Mutanen - [15] Marten Klinth - [1] Mikko Pentinsaari - [3] Paul D.N. Hebert - [2] Peter Huemer - [2]