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The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Venu M. Margam, Emma W. Gachomo, John H. Shukle, Oluwole O. Ariyo, Manfredo J. Seufferheld and Simeon O. Kotchoni A simplified arthropod genomic-DNA extraction protocol for polymerase chain reaction (PCR)-based specimen identification through barcoding. Molecular Biology Reports 2010-10-01;37(7):3631-3635 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [33]
United States - [47]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [52] Scott E. Miller - [5] Charles S Walker - [1] Jim M. Moore - [1] Evgeny V. Zakharov - [2] Robert J. Borth - [4] Margaret Kosmala - [1] Mat Seidensticker - [11]
David L. Wagner - [3]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LOWCE020-06 {Caenurgina erechtea}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Smithsonian Institution, National Museum of Natural History - [5]
University of Connecticut - [3]
University of Minnesota Insect Collection - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [78]
Photography:
CBG Photography Group - [33] David L. Wagner - [2] Gary McDonald - [2] Hilary Lyttle - [1] Information Pending - [2] Jaclyn McCormick - [1] Jay Cosey - [2] Jim Moore - [2] Liam Cardarelli-Goddard - [6] Libby Avis - [4] M. Seidensticker - [14] Margaret Kosmala - [1] Mark J. Dreiling - [2] Mat Seidensticker - [3] Nick Jeffery - [1] R.Turner - [1] Richard Wilson - [1] Robert J. Borth/Hugo L. Kons, Jr. - [4] Tanner A. Matson - [1]
Collectors:
A.Borisenko - [2] Aud I. - [12] BIObus 2008 - [12] Biobus 2011 - [2] Borth & Kons - [4] C. S. Guppy - [3] C.Cook - [1] Charles Melton - [1] David Wagner - [1] Fischer - [12] Gary McDonald - [1] H.D.McGuinness - [2] Hugo Kons Jr. & Robert J. Borth - [2] J.Cossey - [10] J.McCormick - [6] J.Sones - [6] J.Straka - [1] Jim Moore - [1] John Palting - [1] K. Perez - [1] K.Perez - [1] Kate Stone - [8] Krizek - [2] L.Avis - [3] L.Gardiner - [1] Libby Avis - [1] M. Scofield - [3] M. Seidensticker - [3] MC Kosmala - [1] Mark Dreiling - [4] Mat Seidensticker - [5] N.Jeffery - [1] Pogue - [2] R.Avis - [3] Richard Wilson - [2] S.McCubbin - [2] Tanner Matson and David Wagner - [1] Venu Margam and Simeon Kotchoni - [1]
Specimen Identification:
Allison Brown - [1] BOLD ID Engine - [4] BOLD Machine Learning Tool Kit - [1] David L. Wagner - [2] Evgeny V. Zakharov - [12] Jim M. Moore - [1] Kate Perez - [1] Libby Avis - [4] Mathew Seidensticker - [3] R. A. Rahn - [1] Richard L. Wilson - [2] Robert J. Borth - [2] USNM Curators - [4]