The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [82]
United States - [5]
Germany - [9]
Italy - [6]
Finland - [3]
North Macedonia - [2]
Norway - [6]
Austria - [5]
France - [2]
Kyrgyzstan - [2]
DATA MANAGERS:
Public Data:
Private Data:
Nikolaus U Szucsich - [1] Jean-Francois Landry - [3] Jeremy deWaard - [39] CBG Project Management Team - [20] Andreas Segerer - [7] Rodolphe Rougerie - [1] Marko Mutanen - [3] Peter Huemer - [12] Arild Johnsen - [3] Axel Hausmann - [2] Torbjorn Ekrem - [3] Wolfgang Stark - [1] Mat Seidensticker - [1] Mikko Pentinsaari - [1] CBG Collections Unit - [1] Gregory R. Pohl - [2] Thibaud Decaens - [1] Jason R Grant - [1]
Jason J Dombroskie - [2] Paul D.N. Hebert - [9] Jason R Grant - [1] CBG Collections Unit - [7] Carlos Lopez-Vaamonde - [1]
Canadian Forest Service, Northern Forestry Centre - [5]
Canadian Forest Service, Pacific Forestry Centre - [6]
Canadian National Collection of Insects, Arachnids and Nematodes - [3]
Centre for Biodiversity Genomics - [40]
Colorado State University - [1]
Cornell University, Cornell University Insect Collection - [2]
Haus der Natur, Salzburg - [1]
Landesmuseum Kaernten - [1]
NTNU University Museum, Department of Natural History - [3]
Naturmuseum Suedtirol - [1]
Research Collection of Alain Cama - [1]
Research Collection of Alfred Haslberger - [2]
Research Collection of G. Pohl - [1]
Research Collection of Gerard Labonne - [1]
Research Collection of Jeremy deWaard - [2]
Research Collection of Theo Gruenewald - [1]
Research Collection of Wolfgang Stark - [1]
Royal British Columbia Museum - [20]
SNSB, Zoologische Staatssammlung Muenchen - [6]
Tiroler Landesmuseum Ferdinandeum - [9]
University of Alaska Museum - [2]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [6]
University of Oslo, Natural History Museum - [3]
University of Oulu, Zoological Museum - [3]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [99]
Photography:
CBG Photography Group - [2] CBG Robotic Imager - [1] CBG Robotic Rig - [17] Carlos Lopez Vaamonde - [1] Dawn Williams - [1] Deneka, A. J. - [2] Erik Bostrom - [3] Gérard Labonne - [1] G. Rotheneder - [1] Jaclyn McCormick - [4] Jason Grant - [2] Jean-Francois Landry - [3] Jeremy deWaard - [34] Kerstin Wehinger - [2] L. D. Jones - [2] Leif Aarvik - [1] Libby Avis - [5] Megan Swan - [2] Sarah Dykeman - [2] Todd Gilligan - [1] ZSM Hymenoptera Photography Group - [2] ZSM Photography Team - [3] photo work group Dr. Axel Hausmann - [2]
Collectors:
A. Haslberger - [1] Alfred Haslberger - [1] BIOBus 2012 - [5] BIObus 2008 - [1] BIObus 2010 - [4] Carl Fredrik - [3] Ch. - [1] Cyndi Smith - [3] D. - [1] D.A. Macaulay - [3] Doczkal & Schmidt - [2] Dr. Andreas H. Segerer - [4] Dr. Theo Gruenewald - [1] Emma Sylvester - [1] F. Groenen - [1] G. Labonne - [1] G.R. - [2] G.R. Pohl - [2] Hartmuth - [1] Huemer P. - [9] Huemer P. & Tarmann G. M. - [1] J. Hughes - [7] J.Machney - [2] J.R. - [34] JF Landry & G Pohl - [1] Jason Grant - [2] Johnson - [1] K. McCabe - [2] Keith Pickthorn - [1] L. Janke - [2] L.Avis - [4] LG & EK Crabo - [2] Leif Aarvik - [3] Libby Avis - [1] Luehr - [3] M. BILLARD - [1] M. Schwarzfeld - [2] Marko Mutanen - [3] Mat Seidensticker - [1] N.Dudley - [1] Pohl - [2] R.Avis - [4] Strutzberg - [1] T.: Vujnovic - [1] Tarmann B. & Plossl B. - [1] Tarmann G.M. - [1] Wieser - [1] deWaard - [34] lgt. W.Stark - [1]
Specimen Identification:
Andreas Segerer - [7] Axel Hausmann - [2] BOLD Identification System [2020] - [1] BOLD Identification System [] - [1] Cama Alain - [1] Christian Wieser - [1] Gerard Labonne - [1] Gregory R. Pohl - [6] Hartmuth Strutzberg - [1] Jason J Dombroskie - [2] Jason R Grant - [2] Jean-Francois Landry - [2] Kai Berggren - [3] Leif Aarvik - [3] Libby Avis - [5] Marko Mutanen - [3] Paul D.N. Hebert - [9] Peter Huemer - [11] Renee Miskie - [2] Todd Gilligan - [1] Wolfgang Stark - [1]