The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [49]
United Kingdom - [3]
Germany - [5]
France - [1]
Austria - [10]
Netherlands - [1]
Italy - [8]
Norway - [3]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [19] Jeremy deWaard - [26] Paul D.N. Hebert - [3] Andreas Segerer - [5] Peter Huemer - [9] Rodolphe Rougerie - [1] Arild Johnsen - [3] Beverly Mcclenaghan - [1] Jean-Francois Landry - [1] Axel Hausmann - [3] Wolfgang Stark - [4] Nikolaus U Szucsich - [2]
Daniel Handfield - [2] Nikolaus U Szucsich - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
RDLQE133-06 {Spilonota laricana}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian National Collection of Insects, Arachnids and Nematodes - [2]
Centre for Biodiversity Genomics - [19]
Colorado State University - [1]
Haus der Natur, Salzburg - [1]
Landesmuseum Kaernten - [1]
Natural History Museum, London - [3]
Private Collection of Stefan Kirchweger - [1]
Research Collection of Alfred Haslberger - [1]
Research Collection of Daniel Handfield - [28]
Research Collection of Kai Berggren - [2]
Research Collection of Theo Gruenewald - [1]
Research Collection of Wolfgang Stark - [4]
SNSB, Zoologische Staatssammlung Muenchen - [6]
Tiroler Landesmuseum Ferdinandeum - [9]
University of Oslo, Natural History Museum - [1]
Sequencing Centers:
Canadian Centre for DNA Barcoding - [1] Centre for Biodiversity Genomics - [78]
Photography:
CBG Photography Group - [23] Daniel Handfield - [2] G. Rotheneder - [4] Hymenoptera Photo Group - [1] Jaclyn McCormick - [6] Kai Berggren - [3] Kirchweger - [1] Lepidoptera photo group - [3] Rick Turner - [3] S. Heim - [2] Strutzberg H. - [1] Vazrick Nazari - [1] ZSM Hymenoptera Photography Group - [1] ZSM Photography Team - [2]
Collectors:
A. Hausmann - [3] A. W. Thomas - [1] Alfred Haslberger - [1] B. McClenaghan - [1] BIObus 2009 - [6] BIObus 2013 - [5] Berggren - [1] Ch. - [1] Claudette Cormier - [1] D.Engelking - [1] Daniel Handfield - [26] Dr. Andreas H. Segerer - [1] Dr. Theo Gruenewald - [1] F. Groenen - [1] Franz Theimer - [1] GAC 0035 - [1] GAC 0292 - [1] Handfield D. - [2] Hartmuth - [1] Huemer P. - [8] John Morton - [1] Kai - [1] Kai Berggren - [2] Kirchweger - [1] M.Kekkonen - [1] MSP 39 - [1] N.Griffin - [1] Paul Hebert - [2] R. Hinsberger - [1] Rebecca Stone - [1] Reidar Voith - [1] Rouge NUP BioBlitz Volunteers - [1] Schattanek-Wiesmair B. und P. - [1] Stefan - [1] Strutzberg - [1] T.Eagalle - [1] Wieser - [1] lgt. W.Stark - [4]
Specimen Identification:
Andreas Segerer - [5] Anthony W. Thomas - [1] Axel Hausmann - [3] BOLD Identification System [2019] - [4] BOLD Identification System [] - [6] Benjamin Schattanek Wiesmair - [1] Christian Wieser - [1] Daniel Handfield - [28] Hartmuth Strutzberg - [1] Jean-Francois Landry - [2] Kai Berggren - [3] Paul D.N. Hebert - [1] Peter Huemer - [8] Stefan Kirchweger - [1] Todd Gilligan - [1] Wolfgang Stark - [4]