The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [15]
Norway - [9]
United Kingdom - [5]
Germany - [11]
Finland - [9]
Netherlands - [1]
Austria - [8]
United States - [1]
Poland - [1]
Portugal - [1]
Romania - [1]
Nigeria - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jeremy deWaard - [4] Arild Johnsen - [9] Paul D.N. Hebert - [3] Andreas Segerer - [9] Marko Mutanen - [9] Rodolphe Rougerie - [1] Peter Huemer - [6] Chris Looney - [1] CBG Project Management Team - [5] Scott E. Miller - [1] Bjoern Rulik - [2] Beverly Mcclenaghan - [1] Gregory R. Pohl - [1] Sonia AF Ferreira - [1] Wolfgang Stark - [2] Matthew P Besley - [1] Torbjorn Ekrem - [1] CBG Collections Unit - [1] Robin M. Floyd - [2] Charles S Walker - [1]
Peter Buchner - [1] Jeremy deWaard - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
MEC022-04 {Cydia nigricana}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Northern Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [4]
Centre for Biodiversity Genomics - [8]
Colorado State University - [1]
NTNU University Museum, Department of Natural History - [1]
Natural History Museum, London - [4]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Beverly Mcclenaghan - [1]
Research Collection of G. Pohl - [1]
Research Collection of Kai Berggren - [5]
Research Collection of Peter Lichtmannecker - [2]
Research Collection of Richard Heindel - [1]
Research Collection of Theo Gruenewald - [1]
Research Collection of Thomas Guggemoos - [1]
Research Collection of Wolfgang Stark - [2]
S & Z Kovacs Research Collection - [1]
SNSB, Zoologische Staatssammlung Muenchen - [4]
Smithsonian Institution, National Museum of Natural History - [1]
Tiroler Landesmuseum Ferdinandeum - [6]
University of Oslo, Natural History Museum - [4]
University of Oulu - [1]
University of Oulu, Zoological Museum - [8]
Washington State Department of Agriculture - [1]
Zoologisches Forschungsmuseum Alexander Koenig - [2]
Sequencing Centers:
Centre for Biodiversity Genomics - [53] Natural History Museum, London - [1] Unknown - [1]
Photography:
CBG Photography Group - [7] CBG Robotic Imager - [1] Erik Bostrom - [1] G. Rotheneder - [2] Gregory R. Pohl - [1] Jaclyn McCormick - [3] Kai Berggren - [6] Leif Aarvik - [1] Marko Mutanen - [6] Megan Swan - [2] Peter Huemer - [1] Rick Turner - [1] ZSM Hymenoptera Photography Group - [1] ZSM Photography Team - [3] kberggr@online.no - [2]
Collectors:
Aarvik - [1] Ali Karhu - [3] B. McClenaghan - [1] BIOBus 2012 - [1] BIObus 2008 - [1] BIObus 2013 - [1] Berggren - [2] Buchner P. - [1] D.Holden - [1] Don KITCHEN - [1] Dr. Andreas H. Segerer - [4] Dr. Theo Gruenewald - [1] F. Groenen - [1] F. Moreland - [1] G.R.Pohl - [1] GAC 0048 - [1] H.Hansel - [1] Huemer P. - [5] J.F.Landry - [1] Jean-Francois Landry - [1] Kai - [2] Kai Berggren - [4] Kovacs - [1] Leif - [1] Leif Aarvik - [1] M.R.Honey - [1] Marko Mutanen - [6] Martin Corley - [1] Maxwell V.L. Barclay - [1] Melanie - [1] Peter Lichtmannecker - [2] Pohl G.R. - [1] R.Pojar - [3] RAB 236 - [1] Reidar Voith - [1] Richard Heindel - [1] Roberta Tesar - [1] Rulik et al - [2] SMP 610 - [1] Sonia Ferreira - [1] Szmyt - [1] Thomas Guggemoos - [1] Tomi Mutanen - [1] lgt. W.Stark - [2]
Specimen Identification:
Andreas Segerer - [9] Eric H Lagasa - [1] Gregory R. Pohl - [2] J. Brown - [1] Jean-Francois Landry - [1] Kai Berggren - [8] Kate Perez - [5] Leif Aarvik - [2] Marko Mutanen - [9] Martin Corley - [1] Maxwell V.L. Barclay - [1] Peter Buchner - [1] Peter Huemer - [5] Sujeevan Ratnasingham - [3] Todd Gilligan - [1] Wolfgang Stark - [2]