The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [89]
Germany - [5]
Norway - [7]
United Kingdom - [4]
United States - [6]
Finland - [6]
Italy - [1]
Kazakhstan - [1]
Russia - [1]
Kyrgyzstan - [1]
Hungary - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jason R Grant - [1] CBG Project Management Team - [70] Jeremy deWaard - [8] Gregory R. Pohl - [8] Charles S Walker - [3] Axel Hausmann - [9] CBG Collections Unit - [2] Marko Mutanen - [6] Arild Johnsen - [6] Andreas Segerer - [1] Peter Huemer - [1] Marek L Borowiec - [2]
Jason R Grant - [1] Daniel Handfield - [1] David L. Wagner - [1] Arild Johnsen - [1] Paul D.N. Hebert - [2] Axel Hausmann - [1]
Canadian Forest Service, Northern Forestry Centre - [7]
Canadian Forest Service, Pacific Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [1]
Centre for Biodiversity Genomics - [73]
Colorado State University, C. P. Gillette Museum of Arthropod Diversity - [2]
Mined from GenBank, NCBI - [3]
Research Collection of Alfred Haslberger - [1]
Research Collection of Daniel Handfield - [1]
Research Collection of G. Pohl - [1]
Research Collection of J. B. Sullivan - [1]
Research Collection of Kai Berggren - [4]
Research Collection of Norbert Zahm - [1]
Royal British Columbia Museum - [3]
Tiroler Landesmuseum Ferdinandeum - [1]
University of Alaska Museum - [2]
University of Alberta, Strickland Museum of Entomology - [2]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [1]
University of Connecticut - [1]
University of Oslo, Natural History Museum - [3]
University of Oulu, Zoological Museum - [6]
Sequencing Centers:
Centre for Biodiversity Genomics - [110] Unknown - [1]
Photography:
CBG Photography Group - [58] CBG Robotic Imager - [1] CBG Robotic Rig - [1] Daniel Handfield - [1] David L. Wagner - [1] Deneka, A. J. - [6] Dr. Axel Hausmann - [1] Jaclyn McCormick - [2] James Sullivan - [1] Jason Grant - [2] Jenni Moilanen - [2] Jeremy deWaard - [9] Kai Berggren - [7] Kerstin Wehinger - [1] Lepidoptera photo group - [1] Libby Avis - [2] Marko Mutanen - [1] Mira Niemelä - [1] Piia Partanen - [2] ZSM Photography Team - [3] photo N. Zahm - [1] photo work group Dr. Axel Hausmann - [1]
Collectors:
A. Segerer - [2] A. W.Thomas - [6] Alfred Haslberger - [1] Almedal - [1] Anttoni Mutanen - [1] Anweiler - [1] Aud I. - [15] B. C. - [1] BIO Collections Staff - [4] BIO Team - [1] BIOBus 2012 - [1] BIObus 2009 - [1] Berggren - [2] C. S. Guppy - [1] C.S. - [1] C.W.P. - [1] CBG Collections Staff - [1] Crabo - [2] David Wagner - [1] Deneka - [1] Dr. Andreas H. Segerer - [2] Emma Sylvester - [1] Evan Perry - [1] Fischer - [15] G. G. - [1] G.R. - [3] Gregory R. Pohl - [1] Guppy - [1] Handfield D. - [1] Huemer P. - [1] J.B.Sullivan - [1] J.R. - [5] James Sones - [1] Jamie - [1] Jason Grant - [2] Jim Ballantyne - [1] Juhani Itaemies - [1] K. McCabe - [2] Kai - [2] Kai Berggren - [3] Kai Berggren & Terje Sodal - [1] Keith Pickthorn - [5] L. - [2] L. Janke - [2] Libby Avis - [2] Marko Mutanen - [1] N. Zahm - [1] Nestori Mutanen - [1] O. - [1] P. & E.Opler - [2] Panu Vaelimaeki - [2] Paul Hebert - [26] Pohl - [3] R.Leverton - [3] S. & Johannessen - [1] SMP 614 - [1] Saldaitis - [1] Schmidt - [1] Tomi Mutanen - [2] deWaard - [5] local coll. - [1] rare BioBlitz collecting team - [1]
Specimen Identification:
Andreas Segerer - [2] Anthony W. Thomas - [6] Axel Hausmann - [8] BOLD ID Engine - [1] BOLD Identification System [] - [4] Daniel Handfield - [1] David L. Wagner - [1] Gergin A. Blagoev - [5] James B. Sullivan - [1] Jason R Grant - [2] Jean-Francois Landry - [2] Jeremy deWaard - [10] Kai Berggren - [6] Marko Mutanen - [6] Norbert Zahm - [1] Paul D.N. Hebert - [25] Paul Opler - [2] Peter Huemer - [1]