The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
P. D. N. Hebert, J. R. deWaard and J.-F. Landry DNA barcodes for 1/1000 of the animal kingdom Biology Letters 2009-12-16;6(3):359-362 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [179]
United States - [93]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [189] Jeremy deWaard - [58] Paul D.N. Hebert - [2] Akito Y. Kawahara - [1] Jim M. Moore - [1] J. Donald Lafontaine - [21] Marko Mutanen - [1] Charles S Walker - [1] Mat Seidensticker - [3]
Kenneth H Stead - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
XAE435-04 {Raphia frater}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Pacific Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [38]
Centre for Biodiversity Genomics - [205]
MPG Ranch - [3]
Mined from GenBank, NCBI - [1]
Research Collection of Daniel Handfield - [2]
Research Collection of Jim Troubridge - [6]
Royal British Columbia Museum - [1]
University of Alberta, Strickland Museum of Entomology - [14]
University of Guelph - [3]
University of Maryland - [1]
University of Oulu - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [271]
Photography:
Brandon Laforest - [3] CBG Photography Group - [156] Dallas Hudson - [3] Information Pending - [8] Jaclyn McCormick - [35] Jay Cossey - [1] Jeremy deWaard - [1] Jim Moore - [2] Krsiten Mancuso - [4] Lepidoptera Unit - [4] Leptree Project Group - [1] Liam Cardarelli-Goddard - [5] Libby Avis - [1] M. Seidensticker - [2] Mark J. Dreiling - [1] Mat Seidensticker - [1] Nick Jeffery - [1] R.Turner - [3] Rick Turner - [4] Young-suk - [1]
Collectors:
. - [1] A. Li - [1] A. W. Thomas - [10] A.Borisenko - [7] Aud I. - [11] B - [2] B. Walsh - [3] BIOBus 2012 - [1] BIObus 2008 - [44] BIObus 2009 - [14] BIObus 2010 - [10] BioBus 2011 - [7] Biobus 2010 - [2] Biobus 2011 - [1] C. D. Ferris - [1] C. Ferris - [2] C.Carr - [3] Charles Melton - [8] Charles W. Mitter - [1] D.Engelking - [1] D.Handfield - [2] Dallas Clell Hudson - [3] E. Knudson - [3] Eric H. Metzler - [2] Eric Knight - [1] Fischer - [11] G. A.. - [1] G. Anweiler - [2] G.G. Anweiler - [5] Holland & Romero - [3] J. - [5] J. Derhousoff - [1] J. Troubridge - [6] J. de Benedictis - [1] J.Cossey - [16] J.E.Cossey - [1] J.McCormick - [1] J.R. - [1] J.R.Straka - [1] J.Sones - [13] J.Straka - [10] Jim Ballantyne - [9] Jim Moore - [1] K.Perez - [6] Keith Pickthorn - [13] L Mavin & M Young - [2] L.Wallace - [3] Lafontaine and Troubridge - [1] Lars Crabo - [6] Libby Avis - [1] M. Scofield - [1] M. Seidensticker - [1] M.C. Garhart - [1] M.Kekkonen - [1] Mark Dreiling - [13] Mat Seidensticker - [2] Metlevski - [5] N. Jeffery - [7] N.Jeffery - [3] N.W.Jeffery - [1] Opler & Oler - [2] Opler et al - [1] P. A. & E. Opler - [1] P. Opler - [1] P.D.N. Hebert - [9] Paul Hebert - [21] R. Holland - [2] Rouge NUP BioBlitz Volunteers - [1] Ryan Gregory - [3] S.McCubbin - [15] Salsbury - [1] Shannon Dixon - [1] Steve Scott - [1] T.Eagalle - [1] T.J. MacNary - [1] Walsh - [2] deWaard - [1]
Specimen Identification:
Angela Telfer - [4] Anthony W. Thomas - [10] BOLD ID Engine - [3] Christian Schmidt - [51] Evgeny V. Zakharov - [41] Gary G. Anweiler - [6] J. Donald Lafontaine - [2] Jeremy deWaard - [9] Libby Avis - [1] Paul D.N. Hebert - [23] Steve Scott - [1]