The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [288]
United States - [49]
DATA MANAGERS:
Public Data:
Private Data:
CBG Collections Unit - [2] CBG Project Management Team - [182] Kenneth H Stead - [6] Jeremy deWaard - [79] Daniel Handfield - [12] Zhaofu Yang - [21] Chris Looney - [1] Jean-Francois Landry - [25] Scott E. Miller - [2] Evgeny V. Zakharov - [3]
Kenneth H Stead - [1] CBG Project Management Team - [1] Jeremy deWaard - [1] Reza Zahiri - [1]
Canadian Forest Service, Pacific Forestry Centre - [42]
Canadian National Collection of Insects, Arachnids and Nematodes - [44]
Centre for Biodiversity Genomics - [183]
College of Charleston - [3]
Research Collection of Brian Scholtens - [6]
Research Collection of Daniel Handfield - [22]
Research Collection of Jeremy deWaard - [16]
Research Collection of Ken Stead - [1]
Research Collection of Louis Handfield - [5]
Royal British Columbia Museum - [1]
Royal Ontario Museum - [4]
Smithsonian Institution, National Museum of Natural History - [2]
University of Guelph - [6]
Washington State Department of Agriculture - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [320]
Photography:
Brandon Laforest - [4] CBG Photography Group - [76] CBG Robotic Rig - [3] D.Handfield - [10] Dallas Hudson - [1] Gary McDonald - [1] Hilary Lyttle - [3] Information Pending - [7] J.Gill - [7] Jaclyn McCormick - [32] Jean-Francois Landry - [4] Jeremy deWaard - [17] Liam Cardarelli- Goddard - [5] Libby Avis - [11] Megan Swan/ Jasmine St. Pierre - [6] Nick Jeffery - [12] Richard Wilson - [3] Rick Turner - [10] Vazrick Nazari - [12] Young-suk - [3] Zhaofu Yang - [21]
Collectors:
A. - [15] A. C. Sheppard - [4] A. Li - [44] A. W.Thomas - [13] B.Landry - [5] BIOBus 2012 - [5] BIObus 2008 - [17] BIObus 2009 - [34] BIObus 2010 - [3] BIObus 2013 - [1] Brian G. Scholtens - [1] CBG Collecting Team - [1] CBG Collections Staff - [3] Cavan Harpur - [1] Collection of Bryant Mather - [1] D.Engelking - [3] D.Handfield - [20] Dallas Clell Hudson - [1] Daniel Handfield - [4] Dany Brodeur - [1] E. G. Munroe - [1] E.Fuller - [1] E.G. Munroe - [1] Eric LAGASA - [1] F. Quan - [1] F.Tremblay - [3] Forest Insect Survey - [3] Holden D. - [1] I.M. Munroe - [1] Ian Segebarth - [1] Irving Finkelstein - [2] J. DeWaard - [5] J. Derhousoff - [44] J. Shepard - [1] J.-F. Landry & B. Landry - [1] J.-F. Landry & G. Pohl - [1] J.-F. Landry & V. Nazari - [1] J.B.Sullivan - [1] J.C.E. Riotte - [2] J.C.E. Riotte & P. Hebert - [1] J.F. Landry - [1] J.G.Franclemont - [1] J.K.Morton - [1] J.R. - [2] JF Landry - [2] James Adams - [2] Jeremy deWaard - [2] Jim Ballantyne - [4] John Brown - [1] Josh Palumbo - [1] K.Greenham - [1] K.H. Stead - [3] K.H.Stead - [6] Keith Pickthorn - [1] L Mavin & M Young - [9] L. & N. Handfield - [1] L. Handfield & A. Charpantier - [1] L.Attard - [1] L.Avis - [7] L.Handfield - [6] Li - [15] Libby Avis - [4] Linda Thomas - [1] Louis Handfield - [7] M. Sabourin - [2] M.Brown - [1] M.G. Pogue - [1] M.Kekkonen - [3] Mark Dreiling - [7] Michael Pogue - [3] P.D.N. Hebert - [6] Paul Hebert - [26] R. A. Schibner - [1] R. Jaagumagi - [1] R.Avis - [7] R.Wilson - [1] Richard Wilson - [8] Roberta Tesar - [1] Ryan Gregory - [6] S. Shepard - [1] Segebarths - [2] Steve Scott - [2] Stone Barns Center - [2] T.Eagalle - [3] W. E. Tomlinson - [1] deWaard - [2] rare BioBlitz collecting team - [2]
Specimen Identification:
BOLD ID Engine - [4] BOLD Identification System [2019] - [3] BOLD Identification System [2020] - [1] BOLD Identification System [] - [1] Bernard Landry - [1] Christian Schmidt - [1] Daniel Handfield - [23] Eugene G. Munroe - [4] J. Donald Lafontaine - [3] Jean-Francois Landry - [29] Jeremy deWaard - [2] Louis Handfield - [235] M. A. Solis - [2] Renee Miskie - [2] Reza Zahiri - [1] Richard L. Wilson - [2] Steve Scott - [2] Zhaofu Yang - [4]