The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
P. D. N. Hebert, J. R. deWaard and J.-F. Landry DNA barcodes for 1/1000 of the animal kingdom Biology Letters 2009-12-16;6(3):359-362 (PDF)
Jeremy R. deWaard, Paul D. N. Hebert and Leland M. Humble A Comprehensive DNA Barcode Library for the Looper Moths (Lepidoptera: Geometridae) of British Columbia, Canada PLoS ONE 2011-03-28;6(3):e18290 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [170]
United States - [127]
Costa Rica - [18]
Mexico - [3]
Honduras - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [210] CBG Collections Unit - [1] Kenneth H Stead - [1] Christian Schmidt - [1] Paul D.N. Hebert - [3] Scott E. Miller - [4] Brandon J. Laforest - [2] Mat Seidensticker - [3] Evgeny V. Zakharov - [4] Axel Hausmann - [3] Carlo Seifert - [1] Charles S Walker - [1] Kimberley Shropshire - [7] David Plotkin - [1] Jeremy deWaard - [3] Suresh Naik - [11] Mehrdad Hajibabaei - [5] Carmen Pozo de la Tijera - [2] Martha Valdez-Moreno - [1]
Jing V Leong - [6] CBG Collections Unit - [29] CBG Project Management Team - [2] David L. Wagner - [7] Scott E. Miller - [5] Tyler D Nelson - [4] Daniel Handfield - [1] Mehrdad Hajibabaei - [1] Kelsey J Mcgurrin - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LOWCB077-05 {Anavitrinella addendaria}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Academy of Sciences of the Czech Republic, Biology Centre - [2]
Agriculture and Agri-Food Canada, Summerland Research and Development Centre - [4]
Area de Conservacion Guanacaste - [4]
Bavarian State Collection of Zoology - [3]
Biology Centre of the Czech Academy of Sciences, Institute of Entomology - [5]
Canadian Forest Service, Pacific Forestry Centre - [2]
Canadian National Collection of Insects, Arachnids and Nematodes - [5]
Centre for Biodiversity Genomics - [225]
College of Charleston - [2]
El Colegio de la Frontera Sur - [3]
Florida Museum of Natural History, McGuire Center for Lepidoptera and Biodiversity - [1]
MPG Ranch - [3]
Mined from GenBank, NCBI - [1]
Research Collection of D. H. Janzen & W. Hallwachs - [2]
Research Collection of Daniel Handfield - [4]
Research Collection of David Wikle - [1]
Research Collection of Ian Watkinson - [1]
Royal British Columbia Museum - [3]
Smithsonian Institution - [4]
Smithsonian Institution, National Museum of Natural History - [7]
University of Alberta, Strickland Museum of Entomology - [2]
University of Arizona, Insect Collection - [1]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [1]
University of Connecticut - [6]
University of Delaware - [7]
University of Guelph - [5]
University of Idaho, W. F. Barr Entomological Collection - [1]
University of Maryland - [1]
University of Pennsylvania - [12]
Sequencing Centers:
Centre for Biodiversity Genomics - [273] University of British Columbia - [4]
Photography:
Ann S. Hendrickson - [2] Axel Hausmann - [1] Brandon Laforest - [5] C. M. Garvey - [1] CBG Photography Group - [198] CBG Robotic Imager - [1] CBG Robotic Rig - [29] Caitlin M. Garvey - [1] Carlo L. Seifert - [1] Chris Taylor or Kimberley Shropshire - [17] Daniel H. Janzen - [35] Daniel Handfield - [1] David L. Wagner - [4] Florida Museum of Natural History McGuire Center for Lepidoptera and Biodiversity - [1] Information Pending - [6] Jaclyn McCormick - [5] Jay Cossey - [2] Jeremy deWaard - [14] Kelsey McGurrin - [1] Lepidoptera Unit - [1] Lepidoptera photo group - [1] Liam Cardarelli-Goddard - [2] Libby Avis - [5] M. Seidensticker - [1] M. Volf - [6] M.-Y. Chen - [1] Mark J. Dreiling - [3] Mat Seidensticker - [2] Nick Jeffery - [1] Rick Turner - [1] T.A. Matson - [1] Tim Whittier - [1]
Collectors:
A. W. Thomas - [7] A.Borisenko - [6] Adams - [1] Ann Hendrickson - [1] Anweiler - [2] Aud I. - [16] B. Maples - [2] BIO Team - [1] BIObus 2008 - [40] Ben Gagliardi - [3] Benjamin - [1] BioBus 2011 - [1] Biobus 2010 - [2] Biobus 2011 - [3] Brian G. Scholtens - [2] C. Schmidt & L. Crabo - [1] Carmen Pozo - [1] D. Handfield - [3] D.C. Ferguson - [4] D.C.Ferguson - [3] D.Engelking - [3] D.Meadows - [1] David Wagner - [5] Donald R. Davis - [2] Douglas Tallamy - [7] Dr. A. Miehr - [1] E.G.Munroe - [1] E.Munroe - [1] Eric H. Metzler - [1] Estela Dominguez - [2] F.Quesada - [1] Fischer - [16] G. Dorner - [1] G. G. - [2] Gershenz - [1] Giar-Ann - [1] H.Cambronero&F.Quesada - [3] H.Cambronero&R.Franco - [1] Heraty Lab - [14] Heraty lab - [5] Hester Williams et al. - [4] Hettie - [1] I.Munroe - [1] Ian Watkinson - [1] J. Bolling Sullivan - [2] J. Brown - [3] J. Dewaard - [1] J. Hayden - [1] J. Jones - [2] J. Perez - [1] J. deWaard - [6] J.Cossey - [2] J.E.Cossey - [1] J.F. Landry - [1] J.F.G.Clarke - [1] J.R. - [3] J.R.Straka - [1] J.V. Leong - [6] Jacob; Perez - [3] James K Adams & Irving Finkelstein - [2] James Sones - [1] Jim Ballantyne - [1] Jo Gagnon - [1] John Gruber - [1] Jon - [1] Jones - [3] Jose Alberto Sanchez - [2] Jose Cortez - [3] Julia - [3] K. Pickthorn - [6] K. Pickthorn & J. deWaard - [4] K.H.Stead - [1] K.Perez - [5] Karin T. Burghardt - [1] Keith Pickthorn - [2] Korneyev - [1] Kung - [1] L Mavin & M Young - [1] L.Avis - [5] Leslie - [1] M. Scofield - [2] M. Seidensticker - [2] M. Volf - [6] M.Kekkonen - [3] Maples - [1] Mark Dreiling - [10] Mark Mello - [1] Mat Seidensticker - [1] Mike Thomas - [3] Miller - [1] N.Griffin - [1] N.W.Jeffery - [1] Norman - [1] P. Kozel - [6] P.D.N. Hebert - [10] Paul Hebert - [62] R Duncan: A Zocca - [1] R. Haller - [1] R.Avis - [5] Ryan Gregory - [5] S. Korneyev - [2] S.McCubbin - [5] S.Rios - [2] S.Rios&H.Cambronero - [1] Saul-Gershenz - [1] Severyn - [1] Shepard - [1] Steve Scott - [2] Stone Barns Center - [1] T Whittier - [1] T. A. Matson and D. L. Wagner - [1] T. Porion & G. Lachaume - [1] T.Eagalle - [3] W.J. Turner - [1] and Doug Tallamy - [3] deWaard - [3] rare BioBlitz collecting team - [1]
Specimen Identification:
Axel Hausmann - [2] BOLD ID Engine - [8] Brian G. Scholtens - [2] Claude Herbulot - [1] D.H. Janzen - [1] Daniel H. Janzen - [17] Daniel Handfield - [1] David L. Wagner - [5] Eric H. Metzler - [1] Gergin A. Blagoev - [203] James E Hayden - [1] James Halliday Mcdunnough - [1] Jeremy deWaard - [13] Jon Shepard - [2] R. Duncan - [1] Spencer K. Monckton - [17] Tanner A Matson - [2] Tyler D Nelson - [4] USNM Curators - [3]