The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Austria - [7]
Norway - [3]
Germany - [2]
Italy - [4]
Finland - [4]
China - [1]
Russia - [2]
United Kingdom - [1]
DATA MANAGERS:
Public Data:
Private Data:
Axel Hausmann - [5] Arild Johnsen - [3] Peter Huemer - [7] Marko Mutanen - [4] Charles S Walker - [2] Vladimir A. Lukhtanov - [1] Nikolaus U Szucsich - [1] Wolfgang Stark - [1] Matthew P Besley - [1]
Marko J. Taehtinen - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LEFIG968-10 {Venusia cambrica}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Chinese Academy of Sciences, Institute of Zoology - [1]
Haus der Natur, Salzburg - [1]
Landesmuseum Kaernten - [1]
Mined from GenBank, NCBI - [2]
Natural History Museum, London - [1]
Naturmuseum Suedtirol - [1]
Research Collection of Alfred Haslberger - [1]
Research Collection of Marko Taehtinen - [1]
Research Collection of Norbert Poell - [2]
Research Collection of Wolfgang Stark - [1]
SNSB, Zoologische Staatssammlung Muenchen - [1]
Saint Petersburg State University - [1]
Tiroler Landesmuseum Ferdinandeum - [5]
University of Oslo, Natural History Museum - [3]
University of Oulu, Zoological Museum - [4]
Sequencing Centers:
Canadian Centre for DNA Barcoding - [1] Centre for Biodiversity Genomics - [20] Unknown - [1]
Photography:
Christian Wieser - [1] G. Rotheneder - [1] I.A. Makhov - [1] Jaclyn McCormick - [2] Kai Berggren - [1] Marko Tähtinen - [1] Megan Swan - [2] S. Heim - [2] Strutzberg H. - [1] Y.Zou - [1] ZSM Photography Team - [4]
Collectors:
A. Haslberger - [1] Aarvik - [1] Ch. - [1] Dr Gavin R. Broad - [1] Hartmuth - [1] Huemer P. - [6] I.Makhov - [1] Kai Berggren - [1] L. Weigert - [1] Leif - [1] Leif Aarvik - [1] Marko Mutanen - [3] Marko Tahtinen - [1] N. Poell - [2] Panu Vaelimaeki - [1] Rein Arne Golf - [1] Salla Mutanen - [1] Strutzberg - [1] Tomi Mutanen - [1] Wieser - [1] Y.Zou - [1] lgt. W.Stark - [1]
Specimen Identification:
Axel Hausmann - [2] Christian Wieser - [1] Gavin R. Broad - [1] Hartmuth Strutzberg - [1] Ilya A Makhov - [1] Kai Berggren - [1] Leif Aarvik - [2] Marko J. Taehtinen - [1] Marko Mutanen - [4] Norbert Poell - [2] Peter Huemer - [6] Wolfgang Stark - [1] Xue Dayong - [1]