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Specimen Data Sequences Combined
  Record Details For SDP660006-17     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 17_UNE_VS_05 Museum ID:
  Field ID: 17_UNE_VS_05 Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Chordata Subfamily:
  Class: Actinopterygii Genus: Pungitius
  Order: Scorpaeniformes Species: Pungitius pungitius
  Family: Gasterosteidae Subspecies:
  BIN (Cluster ID):
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction: S
  Tissue Descriptor: Sex:
  Brief Note: Stickleback Life Stage:
  Detailed Notes: ::meta:{"specimen":["Vanessa Scott"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Deborah Landry"],"image":["Vanessa Scott","Deborah Landry"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Vanessa Scott","Deborah Landry"]}::endMeta:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2017-07-24
  Province/State: Maine Collectors: Vanessa Scott
  Region/County: Saco River    
  Sector:    
  Exact Site: Freddie's Beach    
  Latitude: 43.4603 Elevation:
  Longitude: -70.3498 Elv. Accuracy:
  Coord. Source: Depth: 3 Meters
  Coord. Accuracy: 5 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP660006-17.COI-5P GenBank Accession:
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 652 bp
 
CCTCTATCTAGTATTCGGTGCCTGGGCCGGCATAGTCGGAACAGCCCTAAGTCTTCTAATTCGAGCTGAGCTCAG
CCAACCTGGGGCCCTCCTAGGTGACGACCAGATCTACAACGTAATTGTTACAGCCCATGCTTTCGTAATAATCTT
CTTTATAGTTATACCAATCATGATCGGAGGTTTCGGTAACTGGCTGATCCCACTGATGATCGGCGCACCCGATAT
GGCGTTCCCGCGGATGAATAACATAAGCTTCTGACTCCTTCCACCCTCTTTCTTACTCCTCCTAGCCTCCTCAGG
GGTTGAAGCCGGGGCGGGTACAGGCTGAACAGTCTACCCTCCTCTATCCGGAAACTTAGCGCACGCAGGTGCCTC
GGTTGACCTAACAATCTTCTCCCTTCACCTAGCAGGAATTTCTTCAATTCTTGGTGCAATTAACTTTATTACCAC
AATTATTAATATGAAACCTCCCGCTATCTCTCAATATCAGACACCCCTATTCGTCTGATCTGTTCTCATCACTGC
AGTCCTACTTCTACTTTCCCTTCCCGTTCTTGCAGCTGGTATTACCATGCTCCTAACAGACCGCAACCTAAACAC
CACCTTCTTTGACCCAGCAGGGGGTGGAGACCCAATCCTCTACCAACACTTA
  Amino Acids:  
 
LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDM
AFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLSGNLAHAGASVDLTIFSLHLAGISSILGAINFITT
IINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
646 C_FishF1t1 / C_FishR1t1
M13R
Reverse high qual 2017-07-26  
634 C_FishF1t1 / C_FishR1t1
M13F-20
Forward high qual 2017-07-26  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2017)
  License Holder:
Unspecified, University of New England

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Deborah Landry, University of New England
Collectors: Vanessa Scott
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: