Public Data Portal - Specimen Record

 
 
 
 
 
Specimen Data Sequences Combined
  Record Details For SDP660005-17     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 17_UNE_ET_07 Museum ID:
  Field ID: 17_UNE_ET_07 Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Arthropoda Subfamily:
  Class: Malacostraca Genus: Crangon
  Order: Decapoda Species: Crangon septemspinosa
  Family: Crangonidae Subspecies:
  BIN (Cluster ID):
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction:
  Tissue Descriptor: Sex:
  Brief Note: Sand Shrimp Life Stage: Immature
  Detailed Notes: ::meta:{"specimen":["Evan Thayer"],"image":["Evan Thayer"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Deborah Landry"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Evan Thayer","Deborah Landry"]}::endMeta:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2017-07-24
  Province/State: Maine Collectors: Evan
  Region/County: Saco River    
  Sector:    
  Exact Site: Freddies Beach    
  Latitude: 43.4603 Elevation:
  Longitude: -70.3798 Elv. Accuracy:
  Coord. Source: Depth: 0.9144 Meters
  Coord. Accuracy: 5 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP660005-17.COI-5P GenBank Accession: MG299086
  Last Updated: 2017-11-13 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 658 bp
 
AACTTTATATTTTATCTTTGGAGCATGAGCTGGAATAGTAGGAACAGCATTAAGTTTATTAATCCGAGCAGAACT
AGGGTCTCCTGGTAGATTGATTGGAAATGATCAAATTTATAATGTAGTTGTCACAGCACATGCTTTTGTAATAAT
TTTCTTTATAGTAATGCCTATTCTTATTGGAGGATTTGGAAATTGATTAGTACCTTTAATACTAGGGGCACCTGA
TATGGCTTTCCCACGTATAAATAATATAAGATTCTGATTACTCCCCCCTGCTTTAACTCTTCTTTTATCTAGGGG
TTTAGTAGAAAGTGGAGTCGGAACTGGCTGAACAGTTTATCCTCCACTATCAGCAGGAATTGCTCACGCTGGGGC
TTCAGTCGACATAGGAATTTTTTCTCTACATTTAGCCGGGGTATCATCTATTCTAGGTGCTATTAATTTTATTAC
AACAGTAATCAATATGCGAGCCGCTGGTATAACTATAGACCGACTTCCTTTATTTGTTTGGTCTGTATTCTTAAC
GGCCATTCTTTTGCTTCTCTCATTGCCAGTTTTAGCCGGTGCTATTACTATACTTTTAACAGATCGAAATTTAAA
TACTTCTTTCTTCGACCCAGTGGGGGGTGGTGACCCTATTTTATATCAACATTTATTC
  Amino Acids:  
 
TLYFIFGAWAGMVGTALSLLIRAELGSPGSLIGNDQIYNVVVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPD
MAFPRMNNMSFWLLPPALTLLLSSGLVESGVGTGWTVYPPLSAGIAHAGASVDMGIFSLHLAGVSSILGAINFIT
TVINMRAAGMTMDRLPLFVWSVFLTAILLLLSLPVLAGAITMLLTDRNLNTSFFDPVGGGDPILYQHLF
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
634 LCO1490 / HCO2198
M13R
Reverse high qual 2017-07-26  
654 LCO1490 / HCO2198
M13F-20
Forward high qual 2017-07-26  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2017)
  License Holder:
Unspecified, University of New England

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Evan, University of New England
Collectors: Evan
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: