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Specimen Data Sequences Combined
  Record Details For SDP648013-17     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 17_DHS_DBL_17A Museum ID:
  Field ID: 17_DHS_DBL_17A Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Chordata Subfamily:
  Class: Elasmobranchii Genus: Squalus
  Order: Squaliformes Species: Squalus acanthias
  Family: Squalidae Subspecies:
  BIN (Cluster ID):
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction:
  Tissue Descriptor: Sex: M
  Brief Note: Dogfish Life Stage: Adult
  Detailed Notes: ::meta:{"specimen":["Nicole Dorier","Domingos Nzuzi","Jordaine Grant","Hamza Shueib","Deborah Landry"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Deborah Landry"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Jordaine Grant","Hamza Shueib"],"image":["Jordaine Grant","Hamza Shueib"]}::endMeta:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2016-05-02
  Province/State: Maine Collectors: Marine Sci Center
  Region/County: Saco Bay    
  Sector:    
  Exact Site:    
  Latitude: 43.4934 Elevation:
  Longitude: -70.3529 Elv. Accuracy:
  Coord. Source: Depth:
  Coord. Accuracy: Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP648013-17.COI-5P GenBank Accession:
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 652 bp
 
CCTTTATTTAATCTTTGGTGCATGAGCAGGAATAGTAGGTACCGCCCTTAGCTTACTTATTCGCGCAGAATTAAG
CCAACCCGGAACACTTCTGGGAGATGATCAAATCTATAATGTTATCGTGACTGCTCACGCTTTTGTAATAATCTT
TTTTATAGTTATGCCTGTAATAATTGGTGGATTCGGAAACTGATTGGTGCCCTTAATAATCGGCGCACCAGATAT
GGCTTTTCCACGAATAAATAATATAAGCTTTTGACTATTACCCCCCTCCCTCCTATTACTTTTAGCCTCAGCTGG
TGTTGAGGCAGGAGCCGGAACCGGCTGAACAGTCTACCCCCCTCTCGCAGGTAACATAGCCCATGCTGGCGCATC
TGTAGATCTAGCCATCTTCTCACTCCATTTAGCTGGTATTTCCTCAATTTTAGCCTCTATTAATTTTATCACAAC
TATTATTAACATAAAACCACCTGCCATTTCTCAGTATCAAACACCACTCTTTGTTTGATCCATTCTTGTAACCAC
CATTCTTCTTCTTCTTTCTCTTCCTGTTCTCGCAGCCGCAATTACGATACTATTAACTGACCGTAATTTAAACAC
AACATTTTTTGACCCTGCCGGAGGGGGAGACCCAATTCTTTACCAACATTTA
  Amino Acids:  
 
LYLIFGAWAGMVGTALSLLIRAELSQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDM
AFPRMNNMSFWLLPPSLLLLLASAGVEAGAGTGWTVYPPLAGNMAHAGASVDLAIFSLHLAGISSILASINFITT
IINMKPPAISQYQTPLFVWSILVTTILLLLSLPVLAAAITMLLTDRNLNTTFFDPAGGGDPILYQHL
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
651 C_FishF1t1 / C_FishR1t1
M13R
Reverse high qual 2017-05-30  
635 C_FishF1t1 / C_FishR1t1
M13F-20
Forward high qual 2017-05-30  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2017)
  License Holder:
Unspecified, Deering High School

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  License:
CreativeCommons - Attribution Share-Alike (2017)
  License Holder:
Unspecified, Deering High School

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Deborah Landry, Deering High School
Collectors: Marine Sci Center
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: