Public Data Portal - Specimen Record

 
 
 
 
 
Specimen Data Sequences Combined
  Record Details For SDP598008-17     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 17_GHS_TREO_03 Museum ID:
  Field ID: 17_GHS_TREO_03 Collection Code:
  Deposited In: University of New England
 

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  TAXONOMY:
  Phylum: Chordata Subfamily: Cottinae
  Class: Actinopterygii Genus: Cottus
  Order: Scorpaeniformes Species: Cottus cognatus
  Family: Cottidae Subspecies:
  BIN (Cluster ID):
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction:
  Tissue Descriptor: Sex:
  Brief Note: Slimy Sculpin Life Stage:
  Detailed Notes: ::meta:{"specimen":["Tyler Richman","Ethan Orach"],"image":["Tyler Richman","Ethan Orach"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Tyler Richman","Ethan Orach"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Tyler Richman","Ethan Orach"]}::endMeta:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2016-10-16
  Province/State: Maine Collectors: Tyler Richman
  Region/County:    
  Sector:    
  Exact Site: Little River Tributary    
  Latitude: 43.72 Elevation: 38.1 Meters
  Longitude: -70.43 Elv. Accuracy:
  Coord. Source: Depth: 0.2 Meters
  Coord. Accuracy: Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP598008-17.COI-5P GenBank Accession:
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 655 bp
 
CACCCTATATCTAGTATTTGGTGCTTGAGCCGGAATAGTAGGCACAGCTTTAAGCCTTCTAATTCGAGCAGAACT
AAGCCAACCCGGCGCCCTTTTGGGGGACGACCAGATTTATAATGTAATTGTTACAGCCCATGCTTTCGTAATAAT
TTTCTTTATAGTAATACCAATTATAATCGGAGGTTTCGGGAACTGACTCGTTCCCCTGATGATTGGCGCTCCTGA
TATGGCCTTTCCTCGAATGAATAATATGAGCTTTTGACTTCTTCCCCCATCTTTTTTACTCCTCCTTGCCTCTTC
GGGAGTCGAAGCAGGGGCCGGAACCGGATGAACAGTTTACCCGCCCCTCGCCGGAAACCTCGCCCACGCAGGAGC
CTCTGTTGATTTAACAATCTTCTCCCTTCACCTAGCAGGTATCTCCTCTATTCTTGGAGCAATCAACTTTATCAC
AACTATCATTAACATAAAACCCCCTGCTATTTCACAATACCAGACCCCACTCTTTGTATGATCTGTTCTTATTAC
TGCCGTTCTACTGCTTCTTTCCCTCCCCGTTCTTGCCGCCGGCATCACAATACTCCTGACAGACCGAAATCTTAA
CACCACCTTCTTTGACCCTGCCGGAGGAGGGGACCCAATCCTTTACCAACATCTC
  Amino Acids:  
 
TLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPD
MAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFIT
TIINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL
  Illustrative Barcode:
 
   

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
626 C_FishF1t1 / C_FishR1t1
M13F-20
Forward high qual 2017-02-07  
636 C_FishF1t1 / C_FishR1t1
M13R
Reverse high qual 2017-02-07  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2017)
  License Holder:
Unspecified, Gorham High School

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  License:
CreativeCommons - Attribution Share-Alike (2017)
  License Holder:
Unspecified, Gorham High School

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  License:
CreativeCommons - Attribution Share-Alike (2017)
  License Holder:
Unspecified, Gorham High School

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit

Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Tyler Richman, Gorham High School
Collectors: Tyler Richman
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: