Public Data Portal - Specimen Record

 
 
 
 
 
Specimen Data Sequences Combined
  Record Details For SDP547025-16     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 16_UNE_Annah_16B Museum ID:
  Field ID: 16_UNE_Annah_16B Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Chordata Subfamily: Phycinae
  Class: Actinopterygii Genus: Urophycis
  Order: Gadiformes Species: Urophycis chuss
  Family: Gadidae Subspecies:
  BIN (Cluster ID): BOLD:AAB0058
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction:
  Tissue Descriptor: Sex:
  Brief Note: RedHake, Annah Life Stage: Adult
  Detailed Notes: ::meta:{"specimen":["Annah Rossvall","Deborah Landry"],"image":["Annah Rossvall","Deborah Landry"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Deborah Landry"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Annah Rossvall","Deborah Landry"]}::endMeta:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2016-07-31
  Province/State: Maine Collectors: Ed Bilsky
  Region/County: Gulf of Maine    
  Sector:    
  Exact Site: Tanta    
  Latitude: 43.3389 Elevation:
  Longitude: -70.0842 Elv. Accuracy:
  Coord. Source: Depth: 15 Meters
  Coord. Accuracy: 5 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP547025-16.COI-5P GenBank Accession: KY250731
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 637 bp
 
TACCCTTTATCTAGTATTTGGTGCCTGAGCCGGAATAGTTGGTACAGCCCTAAGCCTACTTATCCGAGCAGAATT
AAGTCAACCAGGCACCCTCCTGGGCGACGATCAGATTTATAATGTTATCGTAACAGCACATGCCTTCGTAATAAT
CTTCTTTATGGTTATACCCTTAATAATTGGAGGTTTCGGAAATTGGCTTGTCCCCCTAATAATTGGTGCCCCCGA
TATGGCTTTCCCCCGTATGAATAATATAAGTTTCTGACTCCTCCCCCCCTCCTTCTTGCTTCTGTTAGCATCTTC
TGGGGTAGAAGCTGGTGCCGGAACAGGCTGAACAGTTTACCCCCCCCTGGCAAGTAATCTTGCCCACGCTGGTGC
ATCTGTCGATCTCACTATCTTCTCCCTTCACCTAGCAGGTATTTCATCAATTCTTGGAGCCATTAATTTTATCAC
TACCATTATTAACATGAAGCCTCCTACCACAACACTTTATCACATACCCCTATTTGTGTGAGCCGTTCTTATTAC
AGCCGTCCTCCTTCTTCTCTCTCTTCCTGTCTTAGCTGCCGGCATTACTATACTTCTCACAGACCGAAACCTCAA
CACTTCTTTCTTTGACCCTTCTGGAGGAGGAGACCCC
  Amino Acids:  
 
TLYLVFGAWAGMVGTALSLLIRAELSQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPLMIGGFGNWLVPLMIGAPD
MAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLASNLAHAGASVDLTIFSLHLAGISSILGAINFIT
TIINMKPPTTTLYHMPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTSFFDPSGGGDP
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
670 C_VF1di-t1 / C_VR1di-t1
M13F-20
Forward high qual 2016-08-12  
661 C_VF1di-t1 / C_VR1di-t1
M13R
Reverse high qual 2016-08-12  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2016)
  License Holder:
Unspecified, University of New England

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Deborah Landry, University of New England
Collectors: Ed Bilsky
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: