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Specimen Data Sequences Combined
  Record Details For SDP547016-16     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 16_UNE_Will_13 Museum ID:
  Field ID: 16_UNE_Will_13 Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Mollusca Subfamily:
  Class: Bivalvia Genus: Mya
  Order: Myida Species: Mya arenaria
  Family: Myidae Subspecies:
  BIN (Cluster ID): BOLD:AAE6281
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction:
  Tissue Descriptor: Sex:
  Brief Note: clam, Will, Life Stage: Adult
  Detailed Notes: ::meta:{"specimen":["William Pendleton"],"image":["William Pendleton"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Deborah Landry"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["William Pendleton"]}::endMeta:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2016-08-01
  Province/State: Maine Collectors: Will Pendleton
  Region/County: Saco River    
  Sector:    
  Exact Site: Freddies Beach    
  Latitude: 43.4608 Elevation: 1 Meters
  Longitude: -70.3808 Elv. Accuracy:
  Coord. Source: Depth:
  Coord. Accuracy: 10 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP547016-16.COI-5P GenBank Accession: KY250720
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 661 bp
 
GTCTTTGTATTTTGTTTTTTCTCTGTGAGCAGGTTTAGTTGGGACTGGGCTTAGTGTCTTAATTCGTTTAGAGTT
ATCAATACCTTTAAGGTTATTAAAAGATTTTCAGCTTTACAATTTAATTGTAACTAGACACGGGTTAATTATAAT
TTTTTTCCTTGTTATACCCATAATAATGGGCGGGTTCGGAAATTGGCTGGTGCCTCTTATGTTAATTGTACCTGA
CATGGCCTTCCCTCGTATAAATAATATTAGTTTCTGGGTGTTACCAAGATCTATGTTTTTATTATTTTGTTCAAT
GTTTAGAGAGGGGGGGTTTGGTGGGGGATGAACACTTTACCCTCCGTTGTCGAGAAATATAATAGGACACTCTGG
TGCGGCGGGAGACTTTTTAATTTTATCCCTTCATATTGGAGGGGCTTCATCTATTATAGCTTCTCTAAATTTTTA
TAGAACTTGGGGTAACATGCGTGCAGGATGTCACCCGTTTCAGCGAGTTCCTCTTTTCTGTAGGTCTATTGGAGT
TACCAGGTTTTTATTAATTTTAGCAATGCCAGTTTTGGCGGGGGCTTTAACAATGCTTTTAACTGATCGTAATTT
TAATACTGTTTTTTTTGATCCTCCTGGGTCGGCAAATCCAATATTGTTTGTTCATTTGTTT
  Amino Acids:  
 
SLYFVFSLWAGLVGTGLSVLIRLELSMPLSLLKDFQLYNLIVTSHGLIMIFFLVMPMMMGGFGNWLVPLMLIVPD
MAFPRMNNISFWVLPSSMFLLFCSMFSEGGFGGGWTLYPPLSSNMMGHSGAAGDFLILSLHIGGASSIMASLNFY
STWGNMRAGCHPFQRVPLFCSSIGVTSFLLILAMPVLAGALTMLLTDRNFNTVFFDPPGSANPMLFVHLF
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
668 LCO1490 / HCO2198
M13R
Reverse high qual 2016-08-03  
677 LCO1490 / HCO2198
M13F-20
Forward high qual 2016-08-03  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2016)
  License Holder:
Unspecified, University of New England

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Deborah Landry, University of New England
Collectors: Will Pendleton
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: