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Specimen Data Sequences Combined
  Record Details For SDP547010-16     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 16_UNE_Deb_10 Museum ID:
  Field ID: 16_UNE_Deb_10 Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Chordata Subfamily: Gadinae
  Class: Actinopterygii Genus: Gadus
  Order: Gadiformes Species: Gadus morhua
  Family: Gadidae Subspecies:
  BIN (Cluster ID): BOLD:ACF1143
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction: S
  Tissue Descriptor: Muscle Sex:
  Brief Note: Cod; Cory-Deb,DL19-20 Life Stage: Adult
  Detailed Notes: ::meta:{"specimen":["Deborah Landry","Cory Langenbach"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Deborah Landry"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Deborah Landry","Ben Wheeler"],"image":["Deborah Landry"]}::endMeta:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2016-07-19
  Province/State: Maine Collectors: Angela Cica
  Region/County: Saco Bay    
  Sector:    
  Exact Site: Three Tree    
  Latitude: 43.504 Elevation:
  Longitude: -70.294 Elv. Accuracy:
  Coord. Source: Depth: 10 Meters
  Coord. Accuracy: 5 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP547010-16.COI-5P GenBank Accession: KY250726
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 630 bp
 
GTATTTGGTGCCTGAGCCGGCATAGTCGGAACAGCCCTAAGCCTGCTCATTCGAGCAGAGCTAAGTCAACCTGGT
GCACTTCTTGGTGATGATCAAATTTATAATGTGATCGTTACAGCGCACGCTTTCGTAATAATTTTCTTTATAGTA
ATACCACTAATAATTGGAGGCTTTGGGAACTGACTTATTCCTCTAATGATCGGTGCACCAGATATAGCTTTCCCT
CGAATAAATAACATAAGCTTCTGACTTCTTCCTCCATCTTTCCTGCTCCTTTTAGCATCCTCTGGTGTAGAAGCT
GGGGCTGGAACAGGCTGAACTGTCTATCCACCTTTAGCCGGAAACCTCGCTCATGCTGGGGCATCTGTTGATCTC
ACTATTTTTTCTCTTCATCTAGCAGGGATTTCATCAATTCTTGGGGCAATTAATTTTATTACCACAATTATTAAT
ATGAAACCTCCGGCAATTTCACAGTACCAAACACCCCTATTTGTTTGAGCAGTACTAATTACAGCTGTGCTTCTA
CTATTATCTCTCCCCGTCTTAGCAGCTGGTATCACAATACTTCTAACTGACCGTAATCTTAATACTTCTTTCTTT
GACCCTGCTGGAGGAGGTGATCCCATTTTA
  Amino Acids:  
 
VFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPLMIGGFGNWLIPLMIGAPDMAFP
RMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIIN
MKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTSFFDPAGGGDPIL
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
652 C_FishF1t1 / C_FishR1t1
M13R
Reverse high qual 2016-07-27  
639 C_FishF1t1 / C_FishR1t1
M13F-20
Forward high qual 2016-07-27  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2016)
  License Holder:
Unspecified, University of New England

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Angela Cicia, University of New England
Collectors: Angela Cica
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: