Public Data Portal - Specimen Record

 
 
 
 
 
Specimen Data Sequences Combined
  Record Details For SDP547005-16     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 16_UNE_DYOUNG_04 Museum ID:
  Field ID: 16_UNE_DYOUNG_04 Collection Code:
  Deposited In: University of New England
 

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  TAXONOMY:
  Phylum: Annelida Subfamily:
  Class: Polychaeta Genus:
  Order: Species:
  Family: Subspecies:
  BIN (Cluster ID): BOLD:ACQ7122
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction:
  Tissue Descriptor: Body Sex:
  Brief Note: Worm, Danielle, DL7-8 Life Stage: Adult
  Detailed Notes: ::meta:{"specimen":["Danielle Young"],"image":["Danielle Young"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Danielle Young","Deborah Landry"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Danielle Young","Cicy Po"]}::endMeta:www.pnas.org/cgi/doi/10.1073/pnas.1424997112
 
  COLLECTION DATA:
  Country: United States Date Collected: 2016-07-25
  Province/State: Maine Collectors: Cicy Po
  Region/County: Brunswick / Maquoit Bay    
  Sector:    
  Exact Site: Wharton's Point    
  Latitude: 43.867 Elevation:
  Longitude: -69.992 Elv. Accuracy:
  Coord. Source: Depth:
  Coord. Accuracy: 5 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP547005-16.COI-5P GenBank Accession: KY250725
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 658 bp
 
AACCCTATACTTTATCTTCGGTATATGATCAGGGTTATTAGGCACATCTATAAGGCTCCTCATCCGAGCAGAACT
TGGACAACCAGGAGCCTTGTTAGGTAGAGACCAACTGTATAATACAATTGTAACTGCTCACGCATTCCTAATAAT
TTTTTTCTTAGTCATACCAGTAATAATTGGAGGGTTTGGAAACTGATTAGTCCCACTAATACTTGGAGCCCCAGA
TATGGCATTTCCCCGTTTAAATAATATAAGATTCTGACTTCTCCCACCATCACTAATTCTACTATTGTCTAGTGC
TGCAGTAGAAAAGGGAGTTGGTACAGGATGAACTGTATACCCTCCCCTGTCAAGAAACATTGCCCATGCGGGACC
GTCAGTAGATTTAGCTATTTTTTCACTACACCTAGCAGGAGTATCATCCATTATAGGAGCATTAAACTTCATTAC
CACTGTCATCAATATACGATCTAAGGGCCTTCGACTAGAACGCGTACCTTTATTCGTGTGATCAGTAGTTATTAC
AGCAGTACTTTTACTGTTAAGCCTCCCAGTTCTCGCCGGAGCAATCACCATACTACTAACAGACCGTAATCTCAA
CACAGCATTTTTCGACCCTGCAGGANGAGGAGACCCCATCCTATATCAACACCTATTT
  Amino Acids:  
 
TLYFIFGMWSGLLGTSMSLLIRAELGQPGALLGSDQLYNTIVTAHAFLMIFFLVMPVMIGGFGNWLVPLMLGAPD
MAFPRLNNMSFWLLPPSLILLLSSAAVEKGVGTGWTVYPPLSSNIAHAGPSVDLAIFSLHLAGVSSIMGALNFIT
TVINMRSKGLRLERVPLFVWSVVITAVLLLLSLPVLAGAITMLLTDRNLNTAFFDPAGXGDPILYQHLF
  Illustrative Barcode:
 
   

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
664 LCO1490 / HCO2198
M13R
Reverse high qual 2016-07-27  
665 LCO1490 / HCO2198
M13F-20
Forward high qual 2016-07-27  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2016)
  License Holder:
Unspecified, University of New England

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  License:
CreativeCommons - Attribution Share-Alike (2016)
  License Holder:
Unspecified, University of New England

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  License:
CreativeCommons - Attribution Share-Alike (2016)
  License Holder:
Unspecified, University of New England

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit

Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Danielle Young, University of New England
Collectors: Cicy Po
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: