Public Data Portal - Specimen Record

 
 
 
 
 
Specimen Data Sequences Combined
  Record Details For SDP527020-16     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 16_DHS_007B Museum ID:
  Field ID: 16_DHS_007B Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Mollusca Subfamily:
  Class: Bivalvia Genus: Modiolus
  Order: Mytilida Species: Modiolus modiolus
  Family: Mytilidae Subspecies:
  BIN (Cluster ID): BOLD:AAG5349
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction:
  Tissue Descriptor: DNA Sex:
  Brief Note: Horse Mussel, Corey, DH7-8 Life Stage:
  Detailed Notes: ::meta:{"specimen":["Corey Reinholdtsen","Johanna Canter"],"image":["Corey Reinholdtsen","Johanna Canter"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Debbie Landry"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Corey Reinholdtsen","Johanna Canter"]}::endMeta:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2015-09-05
  Province/State: Maine Collectors: Angela Cicia
  Region/County: Saco Bay    
  Sector:    
  Exact Site: Biddeford Pool    
  Latitude: 43.442 Elevation:
  Longitude: -70.341 Elv. Accuracy:
  Coord. Source: Depth: 0.5 Meters
  Coord. Accuracy: 30 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP527020-16.COI-5P GenBank Accession: KX781838
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 604 bp
 
AAGACTCTATATTATCTTAGGTGTTTGATCGGGAATGGTGGGGATTGGTTTAAGAATGTTAATTCGAATTGAGTT
AGGTCGTCCTGGAAGATTTTTAGGGGACGATCAGCTGTATAACGTCATTGTTACGGCCCATGCTTTAGTTATAAT
TTTCTTTATGGTTATGCCTTTAATGGTCGGGGGTTTTGGGAATTGGCTTCTTCCATTAATAATAGGTTCTGTAGA
TATAATTTTTCCGCGACTTAACAATTTGAGATTTTGGTTTCTCCCCTCTTCATTATTTATACTGTTGAGGTCTAC
TTTTATTGAAAGCGGGTCCGGTACTGGATGGACTTTATATCCTCCTTTGTCTTCATATACAGGACATAGTGGCCC
AGCTGTTGACATATCTTTATTTTCTTTACATTTGGCAGGTGCTTCTTCTATTGGTGGATCTATTAACTTTTTAAC
TAGTATAAAAAATATGCCGGTGGAGGTAATGCGAGGAGAGCGGATAATGTTGTTCTTGTGGTCTATGGTGGTAAC
AGCTGTTCTTTTATTGGTGTCTTTGCCTGTGCTGGCTGGCGGTATTACTATGCTGATTTTTGATCGTCATTTTAA
TACT
  Amino Acids:  
 
SLYIILGVWSGMVGIGLSMLIRIELGRPGSFLGDDQLYNVIVTAHALVMIFFMVMPLMVGGFGNWLLPLMMGSVD
MIFPRLNNLSFWFLPSSLFMLLSSTFIESGSGTGWTLYPPLSSYTGHSGPAVDMSLFSLHLAGASSIGGSINFLT
SMKNMPVEVMRGERMMLFLWSMVVTAVLLLVSLPVLAGGITMLIFDRHFNT
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
644 LCO1490 / HCO2198
M13R
Reverse high qual 2016-05-25  
612 LCO1490 / HCO2198
M13F-20
Forward high qual 2016-05-25  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2016)
  License Holder:
Unspecified, Deering High School

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Corey Reinholdtsen, Deering High School
Collectors: Angela Cicia
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: