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Specimen Data Sequences Combined
  Record Details For SDP527006-16     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 16_DHS_003A Museum ID:
  Field ID: 16_DHS_003A Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Arthropoda Subfamily:
  Class: Malacostraca Genus: Pagurus
  Order: Decapoda Species: Pagurus longicarpus
  Family: Paguridae Subspecies:
  BIN (Cluster ID): BOLD:AAA5534
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered: DNA/Tissue + Photo Reproduction:
  Tissue Descriptor: DNA Sex:
  Brief Note: Hermit Crab, Bilan,DH3-DH4, Life Stage:
  Detailed Notes: ::meta:{"specimen":["Bilan Mohamed","Avery Donovan"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Bilan Mohamed","Avery Donovan","Debbie Landry"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Bilan Mohamed","Avery Donovan"],"image":["Bilan Mohamed","Avery Donovan"]}::endMeta:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2015-09-05
  Province/State: Maine Collectors: Angela Cicia
  Region/County: Saco Bay    
  Sector:    
  Exact Site: Biddeford Pool    
  Latitude: 43.442 Elevation:
  Longitude: -70.341 Elv. Accuracy:
  Coord. Source: Depth: 0.5 Meters
  Coord. Accuracy: Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP527006-16.COI-5P GenBank Accession: KX781848
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 645 bp
 
ATCTTCGGAGCTTGAGCTGGAATAGTAGGAACTTCTCTTAGTTTAATTATTCGAGCTGAACTTGGACAACCAGGA
AGACTAATTGGGGATGATCAAATTTATAATGTAGTTGTCACAGCCCATGCATTTGTAATAATTTTCTTCATAGTT
ATACCAATTATAATTGGAGGATTTGGAAACTGATTAGTACCATTAATATTAGGTGCCCCAGATATGGCTTTTCCT
CGAATAAACAATATAAGATTTTGACTTCTTCCACCCTCATTAACACTTCTATTAACAAGAGGAATAGTAGAGAGA
GGTGTTGGAACAGGATGAACTGTTTACCCCCCACTATCTGCTGCAATTGCCCATGCAGGTGCTTCAGTAGATTTA
GGTATTTTTTCCCTTCATTTAGCAGGAGTTTCTTCTATTTTAGGAGCAGTTAATTTTATAACTACAGTTATTAAT
ATACGTCCACAAGGTATAACAATGGATCGTATACCTTTATTTGTATGAGCTGTTTTTATTACAGCAGTTCTTCTA
CTACTATCCCTACCTGTTCTTGCAGGTGCCATTACAATACTTCTTACAGATCGTAATCTAAACACATCATTCTTT
GATCCAGCAGGAGGTGGTGACCCAGTTTTATATCAACATTTATTC
  Amino Acids:  
 
IFGAWAGMVGTSLSLIIRAELGQPGSLIGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFP
RMNNMSFWLLPPSLTLLLTSGMVESGVGTGWTVYPPLSAAIAHAGASVDLGIFSLHLAGVSSILGAVNFMTTVIN
MRPQGMTMDRMPLFVWAVFITAVLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPVLYQHLF
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
666 LCO1490 / HCO2198
M13F-20
Forward high qual 2016-05-25  
647 LCO1490 / HCO2198
M13R
Reverse high qual 2016-05-25  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2016)
  License Holder:
Unspecified, Deering High School

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: Deborah Landry, Deering High School
Collectors: Angela Cicia
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: