Public Data Portal - Specimen Record

 
 
 
 
 
Specimen Data Sequences Combined
  Record Details For SDP258012-15     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 14_UNE_LP_001 Museum ID:
  Field ID: 14_UNE_LP_001 Collection Code:
  Deposited In: University of New England
 

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  TAXONOMY:
  Phylum: Mollusca Subfamily: Littorininae
  Class: Gastropoda Genus: Littorina
  Order: Littorinimorpha Species: Littorina littorea
  Family: Littorinidae Subspecies:
  BIN (Cluster ID): BOLD:AAA1269
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered:DNA/Tissue+Photo Reproduction:
  Tissue Descriptor: DNA Sex:
  Brief Note: Life Stage:
  Detailed Notes: ::meta:{"specimen":["Lili Pugh"],"image":["Lili Pugh"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Lili Pugh"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Lili Pugh"]}::endMeta:
 
  COLLECTION DATA:
  Country: Atlantic Ocean Date Collected: 2014-01-20
  Province/State: Collectors: D. Landry
  Region/County: Casco Bay, Maine    
  Sector:    
  Exact Site: Yarmouth Old Town Landing    
  Latitude: 43.7716 Elevation:
  Longitude: -70.1652 Elv. Accuracy:
  Coord. Source: Depth:
  Coord. Accuracy: 10 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP258012-15.COI-5P GenBank Accession: KT601628
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 658 bp
 
AACATTATATATTTTATTTGGTATATGATCTGGGCTTGTTGGTACTGCCTTAAGTCTACTTATTCGGGCTGAATT
AGGTCAACCTGGCGCTCTCCTGGGAGATGACCAGCTGTACAACGTTATCGTTACAGCCCACGCCTTTGTAATAAT
TTTCTTTCTTGTTATGCCTATAATAATTGGTGGGTTTGGAAATTGACTTGTCCCCTTAATATTAGGAGCACCCGA
TATAGCATTCCCTCGCTTAAATAACATAAGCTTTTGATTACTCCCCCCCGCCTTGTTGTTGTTACTATCTTCTGC
TGCGGTAGAAAGTGGTGCAGGGACGGGTTGAACTGTATATCCTCCTTTATCCGGAAATTTAGCCCATGCCGGAGG
CTCTGTGGACTTAGCCATTTTCTCTCTTCATTTGGCCGGTGTCTCATCTATTTTAGGGGCCGTAAATTTTATTAC
AACTATTATTAATATACGATGACGAGGGATGCAATTCGAGCGATTACCTCTTTTTGTTTGATCTGTAAAAATTAC
AGCCATTCTTTTACTTTTATCCCTTCCAGTTTTAGCAGGAGCCATTACAATATTGTTAACTGATCGAAATTTTAA
CACTGCCTTCTTCGATCCTGCTGGGGGTGGAGATCCTATTCTCTACCAGCATTTATTT
  Amino Acids:  
 
TLYILFGMWSGLVGTALSLLIRAELGQPGALLGDDQLYNVIVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPD
MAFPRLNNMSFWLLPPALLLLLSSAAVESGAGTGWTVYPPLSGNLAHAGGSVDLAIFSLHLAGVSSILGAVNFIT
TIINMRWRGMQFERLPLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTAFFDPAGGGDPILYQHLF
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
667 LCO1490 / HCO2198
M13R
Reverse high qual 2014-01-30  
647 LCO1490 / HCO2198
M13F-20
Forward high qual 2014-01-30  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2015)
  License Holder:
Unspecified, University of New England

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Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: D. Landry, University of New England
Collectors: D. Landry
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: